Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08270 and CA264_08275 are separated by 19 nucleotides CA264_08275 and CA264_08280 are separated by 0 nucleotides
CA264_08270: CA264_08270 - Fe-S cluster assembly protein SufB, at 1,910,649 to 1,912,103
_08270
CA264_08275: CA264_08275 - ABC transporter ATP-binding protein, at 1,912,123 to 1,912,893
_08275
CA264_08280: CA264_08280 - Fe-S cluster assembly protein SufD, at 1,912,894 to 1,914,234
_08280
Position (kb)
1912
1913 Strain fitness (log2 ratio)
-2
-1
0
1 at 1911.240 kb on + strand, within CA264_08270 at 1911.240 kb on + strand, within CA264_08270 at 1911.241 kb on - strand, within CA264_08270 at 1911.329 kb on + strand, within CA264_08270 at 1911.357 kb on - strand, within CA264_08270 at 1911.360 kb on + strand, within CA264_08270 at 1911.448 kb on + strand, within CA264_08270 at 1911.453 kb on + strand, within CA264_08270 at 1911.454 kb on - strand, within CA264_08270 at 1911.454 kb on - strand, within CA264_08270 at 1911.508 kb on - strand, within CA264_08270 at 1911.571 kb on + strand, within CA264_08270 at 1911.572 kb on - strand, within CA264_08270 at 1911.699 kb on + strand, within CA264_08270 at 1911.728 kb on + strand, within CA264_08270 at 1911.744 kb on - strand, within CA264_08270 at 1911.744 kb on - strand, within CA264_08270 at 1911.771 kb on + strand, within CA264_08270 at 1911.866 kb on + strand, within CA264_08270 at 1911.866 kb on + strand, within CA264_08270 at 1911.866 kb on + strand, within CA264_08270 at 1911.908 kb on - strand, within CA264_08270 at 1911.908 kb on - strand, within CA264_08270 at 1911.973 kb on + strand at 1911.973 kb on + strand at 1911.974 kb on - strand at 1912.012 kb on - strand at 1912.073 kb on - strand at 1912.096 kb on + strand at 1912.097 kb on - strand at 1912.097 kb on - strand at 1912.097 kb on - strand at 1912.097 kb on - strand at 1912.104 kb on + strand at 1912.127 kb on + strand at 1912.154 kb on + strand at 1912.181 kb on + strand at 1912.181 kb on + strand at 1912.181 kb on + strand at 1912.208 kb on + strand, within CA264_08275 at 1912.280 kb on - strand, within CA264_08275 at 1912.280 kb on - strand, within CA264_08275 at 1912.281 kb on + strand, within CA264_08275 at 1912.281 kb on + strand, within CA264_08275 at 1912.286 kb on + strand, within CA264_08275 at 1912.286 kb on + strand, within CA264_08275 at 1912.343 kb on + strand, within CA264_08275 at 1912.406 kb on - strand, within CA264_08275 at 1912.440 kb on - strand, within CA264_08275 at 1912.891 kb on + strand at 1912.891 kb on + strand at 1912.892 kb on - strand at 1912.892 kb on - strand at 1912.911 kb on + strand at 1912.914 kb on - strand at 1912.914 kb on - strand at 1912.989 kb on - strand at 1912.997 kb on + strand at 1913.066 kb on - strand, within CA264_08280 at 1913.067 kb on + strand, within CA264_08280 at 1913.068 kb on - strand, within CA264_08280 at 1913.177 kb on - strand, within CA264_08280 at 1913.256 kb on + strand, within CA264_08280 at 1913.294 kb on - strand, within CA264_08280 at 1913.294 kb on - strand, within CA264_08280 at 1913.302 kb on - strand, within CA264_08280 at 1913.307 kb on - strand, within CA264_08280 at 1913.401 kb on - strand, within CA264_08280 at 1913.561 kb on + strand, within CA264_08280 at 1913.593 kb on + strand, within CA264_08280 at 1913.594 kb on - strand, within CA264_08280 at 1913.630 kb on + strand, within CA264_08280 at 1913.631 kb on - strand, within CA264_08280 at 1913.668 kb on + strand, within CA264_08280 at 1913.678 kb on - strand, within CA264_08280 at 1913.678 kb on - strand, within CA264_08280 at 1913.678 kb on - strand, within CA264_08280 at 1913.727 kb on - strand, within CA264_08280 at 1913.727 kb on - strand, within CA264_08280 at 1913.761 kb on + strand, within CA264_08280 at 1913.805 kb on + strand, within CA264_08280 at 1913.805 kb on + strand, within CA264_08280 at 1913.806 kb on - strand, within CA264_08280 at 1913.806 kb on - strand, within CA264_08280 at 1913.890 kb on - strand, within CA264_08280 at 1913.890 kb on - strand, within CA264_08280
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 1,911,240 + CA264_08270 0.41 -0.0 1,911,240 + CA264_08270 0.41 -0.9 1,911,241 - CA264_08270 0.41 +0.5 1,911,329 + CA264_08270 0.47 +0.5 1,911,357 - CA264_08270 0.49 +0.5 1,911,360 + CA264_08270 0.49 -0.1 1,911,448 + CA264_08270 0.55 -0.5 1,911,453 + CA264_08270 0.55 +0.2 1,911,454 - CA264_08270 0.55 -1.6 1,911,454 - CA264_08270 0.55 +0.2 1,911,508 - CA264_08270 0.59 -0.6 1,911,571 + CA264_08270 0.63 -1.3 1,911,572 - CA264_08270 0.63 +0.2 1,911,699 + CA264_08270 0.72 -0.5 1,911,728 + CA264_08270 0.74 -0.6 1,911,744 - CA264_08270 0.75 -0.3 1,911,744 - CA264_08270 0.75 -1.2 1,911,771 + CA264_08270 0.77 +0.3 1,911,866 + CA264_08270 0.84 +0.2 1,911,866 + CA264_08270 0.84 -1.4 1,911,866 + CA264_08270 0.84 +1.0 1,911,908 - CA264_08270 0.87 -0.7 1,911,908 - CA264_08270 0.87 +0.4 1,911,973 + -2.0 1,911,973 + -1.1 1,911,974 - -0.4 1,912,012 - -0.4 1,912,073 - +0.4 1,912,096 + +1.2 1,912,097 - -0.5 1,912,097 - -0.1 1,912,097 - -0.2 1,912,097 - +0.2 1,912,104 + -1.2 1,912,127 + +0.3 1,912,154 + -1.4 1,912,181 + -0.5 1,912,181 + +0.8 1,912,181 + -0.7 1,912,208 + CA264_08275 0.11 -0.9 1,912,280 - CA264_08275 0.20 -0.0 1,912,280 - CA264_08275 0.20 -2.1 1,912,281 + CA264_08275 0.20 -1.2 1,912,281 + CA264_08275 0.20 +1.0 1,912,286 + CA264_08275 0.21 +1.0 1,912,286 + CA264_08275 0.21 +1.3 1,912,343 + CA264_08275 0.29 -1.4 1,912,406 - CA264_08275 0.37 -1.4 1,912,440 - CA264_08275 0.41 -1.7 1,912,891 + +0.1 1,912,891 + +0.1 1,912,892 - -0.3 1,912,892 - -0.7 1,912,911 + +1.3 1,912,914 - +0.2 1,912,914 - +0.1 1,912,989 - -1.2 1,912,997 + +0.3 1,913,066 - CA264_08280 0.13 +0.5 1,913,067 + CA264_08280 0.13 -1.8 1,913,068 - CA264_08280 0.13 +0.8 1,913,177 - CA264_08280 0.21 -0.7 1,913,256 + CA264_08280 0.27 +0.7 1,913,294 - CA264_08280 0.30 +0.6 1,913,294 - CA264_08280 0.30 -1.8 1,913,302 - CA264_08280 0.30 -2.3 1,913,307 - CA264_08280 0.31 +0.1 1,913,401 - CA264_08280 0.38 -0.8 1,913,561 + CA264_08280 0.50 +1.0 1,913,593 + CA264_08280 0.52 -2.1 1,913,594 - CA264_08280 0.52 -1.1 1,913,630 + CA264_08280 0.55 -0.1 1,913,631 - CA264_08280 0.55 +0.5 1,913,668 + CA264_08280 0.58 -0.4 1,913,678 - CA264_08280 0.58 -0.0 1,913,678 - CA264_08280 0.58 +0.1 1,913,678 - CA264_08280 0.58 -1.4 1,913,727 - CA264_08280 0.62 +0.3 1,913,727 - CA264_08280 0.62 +0.1 1,913,761 + CA264_08280 0.65 +0.1 1,913,805 + CA264_08280 0.68 -1.7 1,913,805 + CA264_08280 0.68 -0.7 1,913,806 - CA264_08280 0.68 +0.1 1,913,806 - CA264_08280 0.68 +0.3 1,913,890 - CA264_08280 0.74 -1.0 1,913,890 - CA264_08280 0.74 -1.8
Or see this region's nucleotide sequence