Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07065

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07060 and CA264_07065 are separated by 5 nucleotidesCA264_07065 and CA264_07070 are separated by 320 nucleotides CA264_07060: CA264_07060 - toxic anion resistance protein, at 1,627,308 to 1,628,393 _07060 CA264_07065: CA264_07065 - hypothetical protein, at 1,628,399 to 1,628,839 _07065 CA264_07070: CA264_07070 - DNA polymerase III subunit epsilon, at 1,629,160 to 1,629,714 _07070 Position (kb) 1628 1629Strain fitness (log2 ratio) -2 -1 0 1 2at 1627.488 kb on + strand, within CA264_07060at 1627.489 kb on - strand, within CA264_07060at 1627.489 kb on - strand, within CA264_07060at 1627.495 kb on - strand, within CA264_07060at 1627.495 kb on - strand, within CA264_07060at 1627.685 kb on + strand, within CA264_07060at 1627.685 kb on + strand, within CA264_07060at 1627.685 kb on + strand, within CA264_07060at 1627.686 kb on - strand, within CA264_07060at 1627.686 kb on - strand, within CA264_07060at 1627.686 kb on - strand, within CA264_07060at 1627.690 kb on - strand, within CA264_07060at 1627.690 kb on - strand, within CA264_07060at 1627.690 kb on - strand, within CA264_07060at 1627.760 kb on + strand, within CA264_07060at 1627.805 kb on + strand, within CA264_07060at 1627.834 kb on - strand, within CA264_07060at 1627.834 kb on - strand, within CA264_07060at 1627.941 kb on + strand, within CA264_07060at 1627.942 kb on - strand, within CA264_07060at 1627.952 kb on + strand, within CA264_07060at 1627.954 kb on + strand, within CA264_07060at 1627.954 kb on + strand, within CA264_07060at 1627.970 kb on + strand, within CA264_07060at 1627.970 kb on - strand, within CA264_07060at 1627.991 kb on + strand, within CA264_07060at 1628.066 kb on + strand, within CA264_07060at 1628.066 kb on + strand, within CA264_07060at 1628.066 kb on + strand, within CA264_07060at 1628.067 kb on - strand, within CA264_07060at 1628.330 kb on + strandat 1628.331 kb on - strandat 1628.331 kb on - strandat 1628.419 kb on + strandat 1628.419 kb on + strandat 1628.419 kb on + strandat 1628.419 kb on + strandat 1628.420 kb on - strandat 1628.423 kb on + strandat 1628.423 kb on + strandat 1628.424 kb on - strandat 1628.424 kb on - strandat 1628.441 kb on + strandat 1628.442 kb on - strandat 1628.489 kb on + strand, within CA264_07065at 1628.499 kb on + strand, within CA264_07065at 1628.499 kb on + strand, within CA264_07065at 1628.499 kb on + strand, within CA264_07065at 1628.500 kb on - strand, within CA264_07065at 1628.509 kb on - strand, within CA264_07065at 1628.618 kb on + strand, within CA264_07065at 1628.645 kb on + strand, within CA264_07065at 1628.796 kb on + strandat 1628.801 kb on + strandat 1628.802 kb on - strandat 1628.886 kb on + strandat 1628.949 kb on + strandat 1628.968 kb on + strandat 1629.286 kb on + strand, within CA264_07070at 1629.287 kb on - strand, within CA264_07070at 1629.462 kb on + strand, within CA264_07070at 1629.473 kb on + strand, within CA264_07070at 1629.473 kb on + strand, within CA264_07070at 1629.474 kb on - strand, within CA264_07070at 1629.474 kb on - strand, within CA264_07070at 1629.702 kb on - strandat 1629.742 kb on + strandat 1629.743 kb on - strandat 1629.743 kb on - strandat 1629.743 kb on - strandat 1629.747 kb on + strandat 1629.798 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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1,627,488 + CA264_07060 0.17 -0.9
1,627,489 - CA264_07060 0.17 -0.7
1,627,489 - CA264_07060 0.17 +0.7
1,627,495 - CA264_07060 0.17 +1.2
1,627,495 - CA264_07060 0.17 +0.3
1,627,685 + CA264_07060 0.35 +1.2
1,627,685 + CA264_07060 0.35 -1.2
1,627,685 + CA264_07060 0.35 -2.3
1,627,686 - CA264_07060 0.35 +0.2
1,627,686 - CA264_07060 0.35 +1.1
1,627,686 - CA264_07060 0.35 +0.0
1,627,690 - CA264_07060 0.35 -2.4
1,627,690 - CA264_07060 0.35 -0.4
1,627,690 - CA264_07060 0.35 -0.8
1,627,760 + CA264_07060 0.42 -0.4
1,627,805 + CA264_07060 0.46 -0.4
1,627,834 - CA264_07060 0.48 +0.1
1,627,834 - CA264_07060 0.48 -0.1
1,627,941 + CA264_07060 0.58 -0.2
1,627,942 - CA264_07060 0.58 +0.5
1,627,952 + CA264_07060 0.59 -0.1
1,627,954 + CA264_07060 0.59 +0.7
1,627,954 + CA264_07060 0.59 -0.1
1,627,970 + CA264_07060 0.61 -1.1
1,627,970 - CA264_07060 0.61 -1.6
1,627,991 + CA264_07060 0.63 -1.0
1,628,066 + CA264_07060 0.70 +1.2
1,628,066 + CA264_07060 0.70 -0.2
1,628,066 + CA264_07060 0.70 -0.9
1,628,067 - CA264_07060 0.70 -1.2
1,628,330 + -0.4
1,628,331 - -0.5
1,628,331 - -0.7
1,628,419 + -2.1
1,628,419 + +0.9
1,628,419 + +0.4
1,628,419 + +1.0
1,628,420 - -0.5
1,628,423 + +0.9
1,628,423 + -0.3
1,628,424 - -0.3
1,628,424 - +1.3
1,628,441 + +0.7
1,628,442 - +0.0
1,628,489 + CA264_07065 0.20 +0.7
1,628,499 + CA264_07065 0.23 -0.1
1,628,499 + CA264_07065 0.23 +0.9
1,628,499 + CA264_07065 0.23 -0.4
1,628,500 - CA264_07065 0.23 +0.0
1,628,509 - CA264_07065 0.25 +1.1
1,628,618 + CA264_07065 0.50 +1.9
1,628,645 + CA264_07065 0.56 +0.3
1,628,796 + +1.0
1,628,801 + +0.9
1,628,802 - +0.6
1,628,886 + -0.2
1,628,949 + +0.0
1,628,968 + +0.3
1,629,286 + CA264_07070 0.23 -0.7
1,629,287 - CA264_07070 0.23 -0.3
1,629,462 + CA264_07070 0.54 -0.7
1,629,473 + CA264_07070 0.56 -0.5
1,629,473 + CA264_07070 0.56 +1.8
1,629,474 - CA264_07070 0.57 +0.5
1,629,474 - CA264_07070 0.57 -0.5
1,629,702 - -0.6
1,629,742 + +0.5
1,629,743 - +1.1
1,629,743 - +0.4
1,629,743 - -2.4
1,629,747 + +0.1
1,629,798 + +0.6

Or see this region's nucleotide sequence