Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06950

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06945 and CA264_06950 are separated by 51 nucleotidesCA264_06950 and CA264_06955 are separated by 117 nucleotides CA264_06945: CA264_06945 - short-chain dehydrogenase, at 1,606,225 to 1,607,013 _06945 CA264_06950: CA264_06950 - glutathione peroxidase, at 1,607,065 to 1,607,655 _06950 CA264_06955: CA264_06955 - LLM class flavin-dependent oxidoreductase, at 1,607,773 to 1,608,780 _06955 Position (kb) 1607 1608Strain fitness (log2 ratio) -2 -1 0 1 2at 1606.121 kb on + strandat 1606.121 kb on + strandat 1606.122 kb on - strandat 1606.122 kb on - strandat 1606.127 kb on + strandat 1606.211 kb on - strandat 1606.233 kb on - strandat 1606.314 kb on - strand, within CA264_06945at 1606.322 kb on + strand, within CA264_06945at 1606.540 kb on - strand, within CA264_06945at 1606.540 kb on - strand, within CA264_06945at 1606.605 kb on - strand, within CA264_06945at 1606.654 kb on + strand, within CA264_06945at 1606.654 kb on + strand, within CA264_06945at 1606.681 kb on + strand, within CA264_06945at 1606.791 kb on + strand, within CA264_06945at 1606.886 kb on + strand, within CA264_06945at 1606.886 kb on + strand, within CA264_06945at 1606.886 kb on + strand, within CA264_06945at 1606.947 kb on - strandat 1607.086 kb on + strandat 1607.086 kb on + strandat 1607.156 kb on + strand, within CA264_06950at 1607.156 kb on + strand, within CA264_06950at 1607.225 kb on + strand, within CA264_06950at 1607.296 kb on - strand, within CA264_06950at 1607.432 kb on + strand, within CA264_06950at 1607.465 kb on - strand, within CA264_06950at 1607.465 kb on - strand, within CA264_06950at 1607.532 kb on - strand, within CA264_06950at 1607.658 kb on + strandat 1607.662 kb on + strandat 1607.663 kb on - strandat 1607.663 kb on - strandat 1607.663 kb on - strandat 1607.736 kb on - strandat 1607.736 kb on - strandat 1607.774 kb on + strandat 1607.807 kb on + strandat 1607.834 kb on + strandat 1607.838 kb on + strandat 1607.838 kb on + strandat 1607.838 kb on + strandat 1607.839 kb on - strandat 1607.879 kb on - strand, within CA264_06955at 1607.879 kb on - strand, within CA264_06955at 1607.880 kb on + strand, within CA264_06955at 1607.930 kb on + strand, within CA264_06955at 1607.931 kb on - strand, within CA264_06955at 1608.029 kb on - strand, within CA264_06955at 1608.120 kb on - strand, within CA264_06955at 1608.120 kb on - strand, within CA264_06955at 1608.134 kb on + strand, within CA264_06955at 1608.159 kb on - strand, within CA264_06955at 1608.161 kb on + strand, within CA264_06955at 1608.216 kb on - strand, within CA264_06955at 1608.242 kb on + strand, within CA264_06955at 1608.272 kb on + strand, within CA264_06955at 1608.273 kb on - strand, within CA264_06955at 1608.358 kb on + strand, within CA264_06955at 1608.378 kb on - strand, within CA264_06955at 1608.534 kb on + strand, within CA264_06955at 1608.613 kb on - strand, within CA264_06955at 1608.652 kb on - strand, within CA264_06955at 1608.652 kb on - strand, within CA264_06955at 1608.654 kb on - strand, within CA264_06955

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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1,606,121 + -0.5
1,606,121 + -0.3
1,606,122 - +0.1
1,606,122 - -0.1
1,606,127 + +0.8
1,606,211 - -0.6
1,606,233 - +0.0
1,606,314 - CA264_06945 0.11 -2.0
1,606,322 + CA264_06945 0.12 +0.1
1,606,540 - CA264_06945 0.40 -0.4
1,606,540 - CA264_06945 0.40 +0.6
1,606,605 - CA264_06945 0.48 -0.9
1,606,654 + CA264_06945 0.54 -0.1
1,606,654 + CA264_06945 0.54 -0.4
1,606,681 + CA264_06945 0.58 +0.5
1,606,791 + CA264_06945 0.72 -2.3
1,606,886 + CA264_06945 0.84 -0.3
1,606,886 + CA264_06945 0.84 -0.4
1,606,886 + CA264_06945 0.84 +0.2
1,606,947 - -0.2
1,607,086 + +0.3
1,607,086 + -1.6
1,607,156 + CA264_06950 0.15 +1.1
1,607,156 + CA264_06950 0.15 -2.0
1,607,225 + CA264_06950 0.27 -0.5
1,607,296 - CA264_06950 0.39 -0.2
1,607,432 + CA264_06950 0.62 -0.8
1,607,465 - CA264_06950 0.68 -0.6
1,607,465 - CA264_06950 0.68 -0.2
1,607,532 - CA264_06950 0.79 -2.1
1,607,658 + +0.3
1,607,662 + -0.3
1,607,663 - -0.4
1,607,663 - +0.9
1,607,663 - +0.3
1,607,736 - -1.5
1,607,736 - -0.2
1,607,774 + -1.0
1,607,807 + +0.4
1,607,834 + -0.2
1,607,838 + -1.3
1,607,838 + -0.6
1,607,838 + +0.1
1,607,839 - -1.0
1,607,879 - CA264_06955 0.11 -1.3
1,607,879 - CA264_06955 0.11 -0.4
1,607,880 + CA264_06955 0.11 -0.7
1,607,930 + CA264_06955 0.16 -0.0
1,607,931 - CA264_06955 0.16 -1.2
1,608,029 - CA264_06955 0.25 +0.2
1,608,120 - CA264_06955 0.34 +0.5
1,608,120 - CA264_06955 0.34 -0.3
1,608,134 + CA264_06955 0.36 +2.3
1,608,159 - CA264_06955 0.38 -1.3
1,608,161 + CA264_06955 0.38 -1.7
1,608,216 - CA264_06955 0.44 -0.6
1,608,242 + CA264_06955 0.47 +0.1
1,608,272 + CA264_06955 0.50 -1.8
1,608,273 - CA264_06955 0.50 -0.6
1,608,358 + CA264_06955 0.58 +1.0
1,608,378 - CA264_06955 0.60 -1.0
1,608,534 + CA264_06955 0.75 -1.7
1,608,613 - CA264_06955 0.83 +0.7
1,608,652 - CA264_06955 0.87 -1.4
1,608,652 - CA264_06955 0.87 -1.0
1,608,654 - CA264_06955 0.87 -0.3

Or see this region's nucleotide sequence