Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_06725 and CA264_06730 are separated by 186 nucleotides CA264_06730 and CA264_06735 are separated by 199 nucleotides CA264_06735 and CA264_06740 overlap by 8 nucleotides
CA264_06725: CA264_06725 - SusC/RagA family TonB-linked outer membrane protein, at 1,554,413 to 1,557,904
_06725
CA264_06730: CA264_06730 - hypothetical protein, at 1,558,091 to 1,559,287
_06730
CA264_06735: CA264_06735 - hypothetical protein, at 1,559,487 to 1,559,816
_06735
CA264_06740: CA264_06740 - hypothetical protein, at 1,559,809 to 1,560,258
_06740
Position (kb)
1558
1559
1560 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1557.139 kb on + strand, within CA264_06725 at 1557.200 kb on + strand, within CA264_06725 at 1557.201 kb on - strand, within CA264_06725 at 1557.324 kb on - strand, within CA264_06725 at 1557.352 kb on + strand, within CA264_06725 at 1557.376 kb on + strand, within CA264_06725 at 1557.377 kb on - strand, within CA264_06725 at 1557.440 kb on - strand, within CA264_06725 at 1557.570 kb on - strand at 1557.623 kb on - strand at 1557.699 kb on - strand at 1557.699 kb on - strand at 1557.745 kb on - strand at 1557.745 kb on - strand at 1557.823 kb on + strand at 1557.858 kb on + strand at 1557.859 kb on - strand at 1557.910 kb on - strand at 1557.944 kb on + strand at 1557.945 kb on - strand at 1557.945 kb on - strand at 1557.947 kb on + strand at 1557.947 kb on + strand at 1557.949 kb on + strand at 1557.949 kb on + strand at 1557.980 kb on + strand at 1557.985 kb on - strand at 1557.989 kb on + strand at 1557.989 kb on + strand at 1557.989 kb on + strand at 1558.001 kb on + strand at 1558.012 kb on + strand at 1558.170 kb on - strand at 1558.373 kb on + strand, within CA264_06730 at 1558.373 kb on + strand, within CA264_06730 at 1558.376 kb on - strand, within CA264_06730 at 1558.399 kb on + strand, within CA264_06730 at 1558.400 kb on - strand, within CA264_06730 at 1558.400 kb on - strand, within CA264_06730 at 1558.559 kb on - strand, within CA264_06730 at 1558.562 kb on + strand, within CA264_06730 at 1558.636 kb on + strand, within CA264_06730 at 1558.637 kb on - strand, within CA264_06730 at 1558.656 kb on - strand, within CA264_06730 at 1558.787 kb on + strand, within CA264_06730 at 1558.806 kb on - strand, within CA264_06730 at 1558.887 kb on - strand, within CA264_06730 at 1558.949 kb on + strand, within CA264_06730 at 1558.962 kb on + strand, within CA264_06730 at 1558.963 kb on - strand, within CA264_06730 at 1558.986 kb on - strand, within CA264_06730 at 1559.007 kb on + strand, within CA264_06730 at 1559.223 kb on - strand at 1559.304 kb on + strand at 1559.359 kb on + strand at 1559.363 kb on + strand at 1559.367 kb on + strand at 1559.367 kb on + strand at 1559.368 kb on - strand at 1559.368 kb on - strand at 1559.370 kb on + strand at 1559.419 kb on + strand at 1559.475 kb on + strand at 1559.476 kb on - strand at 1559.506 kb on + strand at 1559.507 kb on - strand at 1559.512 kb on + strand at 1559.513 kb on - strand at 1559.537 kb on + strand, within CA264_06735 at 1559.585 kb on - strand, within CA264_06735 at 1559.585 kb on - strand, within CA264_06735 at 1559.589 kb on + strand, within CA264_06735 at 1559.590 kb on - strand, within CA264_06735 at 1559.591 kb on + strand, within CA264_06735 at 1559.593 kb on + strand, within CA264_06735 at 1559.593 kb on + strand, within CA264_06735 at 1559.593 kb on + strand, within CA264_06735 at 1559.593 kb on + strand, within CA264_06735 at 1559.594 kb on - strand, within CA264_06735 at 1559.710 kb on + strand, within CA264_06735 at 1559.746 kb on + strand, within CA264_06735 at 1559.751 kb on + strand, within CA264_06735 at 1559.752 kb on - strand, within CA264_06735 at 1559.753 kb on + strand, within CA264_06735 at 1559.754 kb on - strand, within CA264_06735 at 1559.786 kb on + strand at 1559.789 kb on + strand at 1559.790 kb on - strand at 1559.795 kb on + strand at 1559.796 kb on - strand at 1559.800 kb on + strand at 1559.876 kb on - strand, within CA264_06740 at 1559.878 kb on + strand, within CA264_06740 at 1559.878 kb on + strand, within CA264_06740 at 1559.913 kb on - strand, within CA264_06740 at 1559.919 kb on + strand, within CA264_06740 at 1559.956 kb on - strand, within CA264_06740 at 1559.962 kb on + strand, within CA264_06740 at 1560.020 kb on - strand, within CA264_06740 at 1560.079 kb on + strand, within CA264_06740 at 1560.137 kb on + strand, within CA264_06740 at 1560.138 kb on - strand, within CA264_06740 at 1560.142 kb on + strand, within CA264_06740 at 1560.143 kb on - strand, within CA264_06740 at 1560.256 kb on + strand at 1560.256 kb on + strand at 1560.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 1,557,139 + CA264_06725 0.78 -0.7 1,557,200 + CA264_06725 0.80 +0.1 1,557,201 - CA264_06725 0.80 +0.6 1,557,324 - CA264_06725 0.83 -1.3 1,557,352 + CA264_06725 0.84 -1.0 1,557,376 + CA264_06725 0.85 -0.6 1,557,377 - CA264_06725 0.85 +0.6 1,557,440 - CA264_06725 0.87 -2.6 1,557,570 - -2.7 1,557,623 - +0.3 1,557,699 - -0.6 1,557,699 - +0.9 1,557,745 - -0.4 1,557,745 - -0.1 1,557,823 + +0.1 1,557,858 + -2.1 1,557,859 - +0.4 1,557,910 - -0.2 1,557,944 + -0.6 1,557,945 - -1.3 1,557,945 - -0.4 1,557,947 + -0.2 1,557,947 + -0.3 1,557,949 + +2.4 1,557,949 + -0.2 1,557,980 + -0.1 1,557,985 - -0.4 1,557,989 + -1.1 1,557,989 + -1.6 1,557,989 + +0.0 1,558,001 + -2.6 1,558,012 + +0.2 1,558,170 - +0.2 1,558,373 + CA264_06730 0.24 -0.6 1,558,373 + CA264_06730 0.24 +0.4 1,558,376 - CA264_06730 0.24 -0.4 1,558,399 + CA264_06730 0.26 -0.2 1,558,400 - CA264_06730 0.26 +0.9 1,558,400 - CA264_06730 0.26 -0.0 1,558,559 - CA264_06730 0.39 -0.2 1,558,562 + CA264_06730 0.39 +0.0 1,558,636 + CA264_06730 0.46 -0.2 1,558,637 - CA264_06730 0.46 +0.3 1,558,656 - CA264_06730 0.47 +1.1 1,558,787 + CA264_06730 0.58 -0.6 1,558,806 - CA264_06730 0.60 -0.2 1,558,887 - CA264_06730 0.66 -0.0 1,558,949 + CA264_06730 0.72 -0.9 1,558,962 + CA264_06730 0.73 +0.4 1,558,963 - CA264_06730 0.73 +0.5 1,558,986 - CA264_06730 0.75 -0.4 1,559,007 + CA264_06730 0.77 +0.0 1,559,223 - -1.8 1,559,304 + -0.4 1,559,359 + -1.5 1,559,363 + -0.3 1,559,367 + +0.6 1,559,367 + -0.6 1,559,368 - +0.7 1,559,368 - -1.1 1,559,370 + -1.9 1,559,419 + -0.8 1,559,475 + -0.5 1,559,476 - -1.6 1,559,506 + +0.1 1,559,507 - -0.3 1,559,512 + +0.4 1,559,513 - +2.4 1,559,537 + CA264_06735 0.15 -2.2 1,559,585 - CA264_06735 0.30 -1.1 1,559,585 - CA264_06735 0.30 -0.5 1,559,589 + CA264_06735 0.31 -0.6 1,559,590 - CA264_06735 0.31 +0.0 1,559,591 + CA264_06735 0.32 +0.0 1,559,593 + CA264_06735 0.32 +0.9 1,559,593 + CA264_06735 0.32 -0.6 1,559,593 + CA264_06735 0.32 -0.7 1,559,593 + CA264_06735 0.32 -1.0 1,559,594 - CA264_06735 0.32 -0.8 1,559,710 + CA264_06735 0.68 +0.1 1,559,746 + CA264_06735 0.78 -0.6 1,559,751 + CA264_06735 0.80 +0.0 1,559,752 - CA264_06735 0.80 -0.3 1,559,753 + CA264_06735 0.81 -0.1 1,559,754 - CA264_06735 0.81 -1.2 1,559,786 + +1.2 1,559,789 + +0.6 1,559,790 - +0.1 1,559,795 + +0.2 1,559,796 - -0.9 1,559,800 + -0.9 1,559,876 - CA264_06740 0.15 +3.7 1,559,878 + CA264_06740 0.15 +1.1 1,559,878 + CA264_06740 0.15 +0.3 1,559,913 - CA264_06740 0.23 -0.7 1,559,919 + CA264_06740 0.24 +0.1 1,559,956 - CA264_06740 0.33 -2.0 1,559,962 + CA264_06740 0.34 -0.1 1,560,020 - CA264_06740 0.47 +0.1 1,560,079 + CA264_06740 0.60 -0.1 1,560,137 + CA264_06740 0.73 +1.4 1,560,138 - CA264_06740 0.73 -2.9 1,560,142 + CA264_06740 0.74 +0.4 1,560,143 - CA264_06740 0.74 +1.0 1,560,256 + +0.8 1,560,256 + +0.1 1,560,257 - +0.4
Or see this region's nucleotide sequence