Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05930

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05925 and CA264_05930 are separated by 20 nucleotidesCA264_05930 and CA264_05935 are separated by 164 nucleotides CA264_05925: CA264_05925 - hypothetical protein, at 1,382,063 to 1,384,291 _05925 CA264_05930: CA264_05930 - glyoxalase, at 1,384,312 to 1,384,746 _05930 CA264_05935: CA264_05935 - hypothetical protein, at 1,384,911 to 1,387,817 _05935 Position (kb) 1384 1385Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1383.347 kb on + strand, within CA264_05925at 1383.348 kb on - strand, within CA264_05925at 1383.354 kb on + strand, within CA264_05925at 1383.356 kb on + strand, within CA264_05925at 1383.373 kb on - strand, within CA264_05925at 1383.373 kb on - strand, within CA264_05925at 1383.435 kb on + strand, within CA264_05925at 1383.541 kb on + strand, within CA264_05925at 1383.598 kb on - strand, within CA264_05925at 1383.598 kb on - strand, within CA264_05925at 1383.655 kb on + strand, within CA264_05925at 1383.655 kb on + strand, within CA264_05925at 1383.711 kb on + strand, within CA264_05925at 1383.711 kb on + strand, within CA264_05925at 1383.712 kb on - strand, within CA264_05925at 1383.713 kb on + strand, within CA264_05925at 1383.714 kb on - strand, within CA264_05925at 1383.750 kb on + strand, within CA264_05925at 1383.906 kb on + strand, within CA264_05925at 1383.958 kb on + strand, within CA264_05925at 1383.971 kb on + strand, within CA264_05925at 1383.972 kb on - strand, within CA264_05925at 1383.972 kb on - strand, within CA264_05925at 1384.012 kb on - strand, within CA264_05925at 1384.017 kb on - strand, within CA264_05925at 1384.017 kb on - strand, within CA264_05925at 1384.017 kb on - strand, within CA264_05925at 1384.069 kb on + strandat 1384.069 kb on + strandat 1384.070 kb on - strandat 1384.070 kb on - strandat 1384.076 kb on + strandat 1384.077 kb on - strandat 1384.077 kb on - strandat 1384.101 kb on + strandat 1384.102 kb on - strandat 1384.145 kb on + strandat 1384.146 kb on - strandat 1384.150 kb on + strandat 1384.188 kb on + strandat 1384.189 kb on - strandat 1384.190 kb on + strandat 1384.190 kb on + strandat 1384.191 kb on - strandat 1384.194 kb on + strandat 1384.210 kb on - strandat 1384.290 kb on - strandat 1384.290 kb on - strandat 1384.295 kb on + strandat 1384.296 kb on - strandat 1384.310 kb on - strandat 1384.325 kb on + strandat 1384.340 kb on + strandat 1384.341 kb on - strandat 1384.518 kb on + strand, within CA264_05930at 1384.649 kb on - strand, within CA264_05930at 1384.738 kb on - strandat 1384.738 kb on - strandat 1384.739 kb on + strandat 1384.739 kb on + strandat 1384.744 kb on + strandat 1384.744 kb on + strandat 1384.745 kb on - strandat 1384.749 kb on - strandat 1384.788 kb on + strandat 1384.791 kb on - strandat 1384.791 kb on - strandat 1384.794 kb on + strandat 1384.794 kb on + strandat 1384.795 kb on - strandat 1384.812 kb on - strandat 1384.867 kb on - strandat 1384.887 kb on + strandat 1384.904 kb on + strandat 1384.905 kb on - strandat 1384.905 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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1,383,347 + CA264_05925 0.58 -0.1
1,383,348 - CA264_05925 0.58 -0.4
1,383,354 + CA264_05925 0.58 -0.3
1,383,356 + CA264_05925 0.58 -0.3
1,383,373 - CA264_05925 0.59 -0.4
1,383,373 - CA264_05925 0.59 -1.0
1,383,435 + CA264_05925 0.62 -0.9
1,383,541 + CA264_05925 0.66 -0.2
1,383,598 - CA264_05925 0.69 -1.6
1,383,598 - CA264_05925 0.69 -0.7
1,383,655 + CA264_05925 0.71 +0.0
1,383,655 + CA264_05925 0.71 -0.3
1,383,711 + CA264_05925 0.74 -1.7
1,383,711 + CA264_05925 0.74 -2.4
1,383,712 - CA264_05925 0.74 -1.6
1,383,713 + CA264_05925 0.74 -1.1
1,383,714 - CA264_05925 0.74 -0.4
1,383,750 + CA264_05925 0.76 -1.1
1,383,906 + CA264_05925 0.83 -0.1
1,383,958 + CA264_05925 0.85 -2.1
1,383,971 + CA264_05925 0.86 +0.1
1,383,972 - CA264_05925 0.86 +2.7
1,383,972 - CA264_05925 0.86 -0.9
1,384,012 - CA264_05925 0.87 +0.2
1,384,017 - CA264_05925 0.88 -0.6
1,384,017 - CA264_05925 0.88 +0.6
1,384,017 - CA264_05925 0.88 +1.1
1,384,069 + -1.8
1,384,069 + -1.1
1,384,070 - -1.4
1,384,070 - -0.6
1,384,076 + -0.4
1,384,077 - -0.9
1,384,077 - -0.3
1,384,101 + -1.3
1,384,102 - +0.2
1,384,145 + -2.0
1,384,146 - -0.4
1,384,150 + +1.0
1,384,188 + -1.3
1,384,189 - -1.7
1,384,190 + -1.4
1,384,190 + -1.3
1,384,191 - -0.3
1,384,194 + -2.9
1,384,210 - -0.4
1,384,290 - +0.4
1,384,290 - -0.1
1,384,295 + -0.6
1,384,296 - -0.4
1,384,310 - +0.3
1,384,325 + -1.0
1,384,340 + -0.7
1,384,341 - +0.1
1,384,518 + CA264_05930 0.47 -1.0
1,384,649 - CA264_05930 0.77 +0.4
1,384,738 - +0.4
1,384,738 - +0.8
1,384,739 + +3.0
1,384,739 + +1.0
1,384,744 + +0.0
1,384,744 + -0.7
1,384,745 - +0.4
1,384,749 - -0.5
1,384,788 + -2.3
1,384,791 - +1.6
1,384,791 - +0.4
1,384,794 + -0.2
1,384,794 + +0.9
1,384,795 - +1.2
1,384,812 - -1.1
1,384,867 - +0.5
1,384,887 + -0.1
1,384,904 + +1.2
1,384,905 - +3.4
1,384,905 - -0.7

Or see this region's nucleotide sequence