Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04380 and CA264_04385 are separated by 287 nucleotides CA264_04385 and CA264_04390 are separated by 305 nucleotides
CA264_04380: CA264_04380 - response regulator, at 1,013,884 to 1,015,050
_04380
CA264_04385: CA264_04385 - hypothetical protein, at 1,015,338 to 1,015,808
_04385
CA264_04390: CA264_04390 - ABC transporter permease, at 1,016,114 to 1,016,929
_04390
Position (kb)
1015
1016 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1014.469 kb on - strand, within CA264_04380 at 1014.557 kb on - strand, within CA264_04380 at 1014.557 kb on - strand, within CA264_04380 at 1014.557 kb on - strand, within CA264_04380 at 1014.627 kb on + strand, within CA264_04380 at 1014.627 kb on + strand, within CA264_04380 at 1014.631 kb on + strand, within CA264_04380 at 1014.632 kb on - strand, within CA264_04380 at 1014.819 kb on + strand, within CA264_04380 at 1014.820 kb on - strand, within CA264_04380 at 1014.820 kb on - strand, within CA264_04380 at 1014.823 kb on - strand, within CA264_04380 at 1014.841 kb on + strand, within CA264_04380 at 1014.891 kb on + strand, within CA264_04380 at 1014.891 kb on + strand, within CA264_04380 at 1014.974 kb on + strand at 1014.974 kb on + strand at 1014.974 kb on + strand at 1014.975 kb on - strand at 1015.031 kb on - strand at 1015.050 kb on + strand at 1015.050 kb on + strand at 1015.060 kb on + strand at 1015.072 kb on + strand at 1015.076 kb on + strand at 1015.076 kb on + strand at 1015.077 kb on - strand at 1015.077 kb on - strand at 1015.078 kb on + strand at 1015.079 kb on - strand at 1015.083 kb on - strand at 1015.139 kb on - strand at 1015.148 kb on - strand at 1015.193 kb on - strand at 1015.198 kb on + strand at 1015.229 kb on + strand at 1015.230 kb on - strand at 1015.256 kb on + strand at 1015.256 kb on + strand at 1015.257 kb on - strand at 1015.257 kb on - strand at 1015.339 kb on + strand at 1015.340 kb on - strand at 1015.367 kb on + strand at 1015.367 kb on + strand at 1015.367 kb on + strand at 1015.368 kb on - strand at 1015.368 kb on - strand at 1015.368 kb on - strand at 1015.368 kb on - strand at 1015.372 kb on - strand at 1015.445 kb on - strand, within CA264_04385 at 1015.456 kb on + strand, within CA264_04385 at 1015.456 kb on + strand, within CA264_04385 at 1015.457 kb on - strand, within CA264_04385 at 1015.486 kb on - strand, within CA264_04385 at 1015.511 kb on + strand, within CA264_04385 at 1015.512 kb on - strand, within CA264_04385 at 1015.526 kb on - strand, within CA264_04385 at 1015.790 kb on + strand at 1015.798 kb on - strand at 1015.875 kb on - strand at 1015.875 kb on - strand at 1015.875 kb on - strand at 1015.875 kb on - strand at 1015.876 kb on + strand at 1015.876 kb on + strand at 1015.876 kb on + strand at 1015.876 kb on + strand at 1015.877 kb on + strand at 1015.880 kb on - strand at 1015.880 kb on - strand at 1015.897 kb on - strand at 1015.926 kb on + strand at 1015.991 kb on + strand at 1015.993 kb on + strand at 1015.996 kb on - strand at 1015.996 kb on - strand at 1015.998 kb on - strand at 1016.021 kb on + strand at 1016.030 kb on - strand at 1016.037 kb on + strand at 1016.071 kb on - strand at 1016.112 kb on + strand at 1016.113 kb on - strand at 1016.121 kb on + strand at 1016.140 kb on + strand at 1016.160 kb on - strand at 1016.285 kb on + strand, within CA264_04390 at 1016.285 kb on + strand, within CA264_04390 at 1016.285 kb on + strand, within CA264_04390 at 1016.286 kb on - strand, within CA264_04390 at 1016.286 kb on - strand, within CA264_04390 at 1016.292 kb on + strand, within CA264_04390 at 1016.423 kb on - strand, within CA264_04390 at 1016.561 kb on - strand, within CA264_04390 at 1016.599 kb on + strand, within CA264_04390 at 1016.600 kb on - strand, within CA264_04390 at 1016.621 kb on + strand, within CA264_04390 at 1016.621 kb on + strand, within CA264_04390 at 1016.622 kb on - strand, within CA264_04390 at 1016.622 kb on - strand, within CA264_04390 at 1016.622 kb on - strand, within CA264_04390 at 1016.622 kb on - strand, within CA264_04390 at 1016.622 kb on - strand, within CA264_04390 at 1016.661 kb on + strand, within CA264_04390 at 1016.661 kb on + strand, within CA264_04390 at 1016.661 kb on + strand, within CA264_04390 at 1016.662 kb on - strand, within CA264_04390 at 1016.662 kb on - strand, within CA264_04390 at 1016.693 kb on + strand, within CA264_04390 at 1016.748 kb on + strand, within CA264_04390 at 1016.770 kb on + strand, within CA264_04390 at 1016.792 kb on + strand, within CA264_04390 at 1016.792 kb on + strand, within CA264_04390 at 1016.792 kb on + strand, within CA264_04390 at 1016.792 kb on + strand, within CA264_04390 at 1016.793 kb on - strand, within CA264_04390
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 1,014,469 - CA264_04380 0.50 -1.4 1,014,557 - CA264_04380 0.58 +0.6 1,014,557 - CA264_04380 0.58 +0.3 1,014,557 - CA264_04380 0.58 -0.2 1,014,627 + CA264_04380 0.64 -0.7 1,014,627 + CA264_04380 0.64 -1.2 1,014,631 + CA264_04380 0.64 -1.5 1,014,632 - CA264_04380 0.64 -2.4 1,014,819 + CA264_04380 0.80 -0.3 1,014,820 - CA264_04380 0.80 -0.3 1,014,820 - CA264_04380 0.80 -0.5 1,014,823 - CA264_04380 0.80 -0.9 1,014,841 + CA264_04380 0.82 -0.9 1,014,891 + CA264_04380 0.86 -0.1 1,014,891 + CA264_04380 0.86 +0.5 1,014,974 + -0.6 1,014,974 + -3.6 1,014,974 + -0.0 1,014,975 - -1.7 1,015,031 - +1.2 1,015,050 + +0.5 1,015,050 + -0.4 1,015,060 + -1.5 1,015,072 + +0.2 1,015,076 + +1.9 1,015,076 + -0.4 1,015,077 - +1.9 1,015,077 - +0.5 1,015,078 + -1.5 1,015,079 - +1.5 1,015,083 - +0.3 1,015,139 - -0.3 1,015,148 - -0.6 1,015,193 - -1.1 1,015,198 + -0.7 1,015,229 + -0.9 1,015,230 - +0.6 1,015,256 + -0.8 1,015,256 + -1.5 1,015,257 - -0.3 1,015,257 - -0.3 1,015,339 + -1.9 1,015,340 - +0.8 1,015,367 + -1.8 1,015,367 + +0.1 1,015,367 + -1.0 1,015,368 - +0.3 1,015,368 - +0.5 1,015,368 - -0.2 1,015,368 - +0.5 1,015,372 - -0.8 1,015,445 - CA264_04385 0.23 -2.1 1,015,456 + CA264_04385 0.25 -0.2 1,015,456 + CA264_04385 0.25 +0.4 1,015,457 - CA264_04385 0.25 -1.2 1,015,486 - CA264_04385 0.31 -0.6 1,015,511 + CA264_04385 0.37 -0.3 1,015,512 - CA264_04385 0.37 -1.2 1,015,526 - CA264_04385 0.40 -0.6 1,015,790 + -0.7 1,015,798 - -0.8 1,015,875 - -0.5 1,015,875 - -0.1 1,015,875 - +0.7 1,015,875 - -1.3 1,015,876 + -0.8 1,015,876 + -0.6 1,015,876 + -0.5 1,015,876 + -0.5 1,015,877 + -1.3 1,015,880 - +0.1 1,015,880 - +0.3 1,015,897 - -1.2 1,015,926 + +0.5 1,015,991 + -1.4 1,015,993 + -0.4 1,015,996 - -0.4 1,015,996 - -0.4 1,015,998 - -0.9 1,016,021 + -1.2 1,016,030 - -0.5 1,016,037 + -1.5 1,016,071 - +0.1 1,016,112 + +1.7 1,016,113 - +0.3 1,016,121 + +0.3 1,016,140 + -0.2 1,016,160 - +2.0 1,016,285 + CA264_04390 0.21 +0.4 1,016,285 + CA264_04390 0.21 -0.0 1,016,285 + CA264_04390 0.21 +0.1 1,016,286 - CA264_04390 0.21 -0.7 1,016,286 - CA264_04390 0.21 +0.5 1,016,292 + CA264_04390 0.22 +0.6 1,016,423 - CA264_04390 0.38 -1.5 1,016,561 - CA264_04390 0.55 +0.1 1,016,599 + CA264_04390 0.59 +0.5 1,016,600 - CA264_04390 0.60 +1.5 1,016,621 + CA264_04390 0.62 +0.3 1,016,621 + CA264_04390 0.62 +0.2 1,016,622 - CA264_04390 0.62 +0.8 1,016,622 - CA264_04390 0.62 +0.9 1,016,622 - CA264_04390 0.62 +1.7 1,016,622 - CA264_04390 0.62 +2.5 1,016,622 - CA264_04390 0.62 +2.4 1,016,661 + CA264_04390 0.67 +0.4 1,016,661 + CA264_04390 0.67 +0.2 1,016,661 + CA264_04390 0.67 -1.5 1,016,662 - CA264_04390 0.67 +0.6 1,016,662 - CA264_04390 0.67 +0.7 1,016,693 + CA264_04390 0.71 -0.5 1,016,748 + CA264_04390 0.78 +1.1 1,016,770 + CA264_04390 0.80 -0.5 1,016,792 + CA264_04390 0.83 +0.8 1,016,792 + CA264_04390 0.83 +0.1 1,016,792 + CA264_04390 0.83 -0.6 1,016,792 + CA264_04390 0.83 +1.1 1,016,793 - CA264_04390 0.83 -1.4
Or see this region's nucleotide sequence