Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03580 and CA264_03585 are separated by 421 nucleotides CA264_03585 and CA264_03590 are separated by 184 nucleotides CA264_03590 and CA264_03595 are separated by 333 nucleotides
CA264_03580: CA264_03580 - ATP-dependent helicase HrpB, at 832,856 to 835,303
_03580
CA264_03585: CA264_03585 - hypothetical protein, at 835,725 to 836,015
_03585
CA264_03590: CA264_03590 - hypothetical protein, at 836,200 to 836,601
_03590
CA264_03595: CA264_03595 - sodium:alanine symporter, at 836,935 to 838,389
_03595
Position (kb) 836
837 Strain fitness (log2 ratio) -2
-1
0
1
2 at 835.301 kb on + strand at 835.301 kb on + strand at 835.301 kb on + strand at 835.301 kb on + strand at 835.302 kb on - strand at 835.368 kb on - strand at 835.375 kb on + strand at 835.375 kb on + strand at 835.375 kb on + strand at 835.376 kb on - strand at 835.376 kb on - strand at 835.376 kb on - strand at 835.376 kb on - strand at 835.387 kb on - strand at 835.387 kb on - strand at 835.393 kb on - strand at 835.427 kb on - strand at 835.448 kb on - strand at 835.535 kb on - strand at 835.535 kb on - strand at 835.559 kb on - strand at 835.690 kb on - strand at 835.781 kb on - strand, within CA264_03585 at 835.820 kb on + strand, within CA264_03585 at 835.916 kb on + strand, within CA264_03585 at 835.916 kb on + strand, within CA264_03585 at 835.917 kb on - strand, within CA264_03585 at 835.917 kb on - strand, within CA264_03585 at 836.007 kb on - strand at 836.096 kb on + strand at 836.097 kb on - strand at 836.098 kb on + strand at 836.103 kb on - strand at 836.121 kb on + strand at 836.125 kb on + strand at 836.125 kb on + strand at 836.126 kb on - strand at 836.130 kb on + strand at 836.131 kb on - strand at 836.163 kb on - strand at 836.163 kb on - strand at 836.163 kb on - strand at 836.201 kb on + strand at 836.202 kb on - strand at 836.202 kb on - strand at 836.206 kb on - strand at 836.327 kb on - strand, within CA264_03590 at 836.358 kb on + strand, within CA264_03590 at 836.379 kb on - strand, within CA264_03590 at 836.421 kb on + strand, within CA264_03590 at 836.594 kb on + strand at 836.595 kb on - strand at 836.604 kb on - strand at 836.604 kb on - strand at 836.604 kb on - strand at 836.612 kb on - strand at 836.620 kb on + strand at 836.630 kb on + strand at 836.630 kb on + strand at 836.630 kb on + strand at 836.631 kb on - strand at 836.631 kb on - strand at 836.631 kb on - strand at 836.631 kb on - strand at 836.631 kb on - strand at 836.631 kb on - strand at 836.631 kb on - strand at 836.660 kb on + strand at 836.661 kb on - strand at 836.669 kb on - strand at 836.669 kb on - strand at 836.674 kb on - strand at 836.726 kb on + strand at 836.727 kb on - strand at 836.727 kb on - strand at 836.727 kb on - strand at 836.729 kb on + strand at 836.729 kb on + strand at 836.730 kb on - strand at 836.730 kb on - strand at 836.771 kb on + strand at 836.771 kb on + strand at 836.771 kb on + strand at 836.771 kb on + strand at 836.771 kb on + strand at 836.771 kb on + strand at 836.772 kb on - strand at 836.772 kb on - strand at 836.772 kb on - strand at 836.772 kb on - strand at 836.772 kb on - strand at 836.809 kb on - strand at 836.827 kb on - strand at 836.936 kb on + strand at 836.947 kb on + strand at 837.248 kb on + strand, within CA264_03595 at 837.273 kb on - strand, within CA264_03595 at 837.275 kb on + strand, within CA264_03595 at 837.275 kb on + strand, within CA264_03595 at 837.276 kb on - strand, within CA264_03595 at 837.276 kb on - strand, within CA264_03595 at 837.278 kb on + strand, within CA264_03595 at 837.319 kb on - strand, within CA264_03595 at 837.351 kb on - strand, within CA264_03595 at 837.354 kb on + strand, within CA264_03595 at 837.355 kb on - strand, within CA264_03595 at 837.414 kb on + strand, within CA264_03595 at 837.434 kb on - strand, within CA264_03595 at 837.443 kb on + strand, within CA264_03595 at 837.444 kb on - strand, within CA264_03595 at 837.465 kb on + strand, within CA264_03595 at 837.504 kb on - strand, within CA264_03595 at 837.520 kb on + strand, within CA264_03595 at 837.521 kb on - strand, within CA264_03595 at 837.580 kb on - strand, within CA264_03595 at 837.597 kb on + strand, within CA264_03595
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 835,301 + +1.9 835,301 + +0.6 835,301 + -0.2 835,301 + -0.9 835,302 - +1.0 835,368 - -0.6 835,375 + +0.2 835,375 + +0.5 835,375 + +1.5 835,376 - -0.5 835,376 - +0.4 835,376 - -0.6 835,376 - -0.4 835,387 - -1.2 835,387 - -0.7 835,393 - -0.4 835,427 - +1.2 835,448 - -0.0 835,535 - -1.6 835,535 - +1.0 835,559 - -0.0 835,690 - -0.7 835,781 - CA264_03585 0.19 +0.6 835,820 + CA264_03585 0.33 +0.2 835,916 + CA264_03585 0.66 -0.3 835,916 + CA264_03585 0.66 +0.2 835,917 - CA264_03585 0.66 +0.4 835,917 - CA264_03585 0.66 +0.2 836,007 - -0.5 836,096 + -0.9 836,097 - +0.8 836,098 + -1.3 836,103 - -0.2 836,121 + -0.9 836,125 + +0.9 836,125 + +0.1 836,126 - +1.4 836,130 + +1.0 836,131 - -0.8 836,163 - -0.1 836,163 - +0.0 836,163 - -0.9 836,201 + -2.3 836,202 - -0.2 836,202 - -0.3 836,206 - -0.0 836,327 - CA264_03590 0.32 +1.4 836,358 + CA264_03590 0.39 -1.9 836,379 - CA264_03590 0.45 +0.3 836,421 + CA264_03590 0.55 -1.0 836,594 + -0.7 836,595 - -0.3 836,604 - +1.1 836,604 - +0.6 836,604 - +1.0 836,612 - +1.3 836,620 + -1.0 836,630 + +0.0 836,630 + -0.5 836,630 + +0.6 836,631 - +0.4 836,631 - -1.1 836,631 - -0.3 836,631 - +0.1 836,631 - -1.5 836,631 - +1.1 836,631 - +0.2 836,660 + -1.3 836,661 - -1.9 836,669 - +0.2 836,669 - +0.3 836,674 - +0.1 836,726 + +0.4 836,727 - -0.8 836,727 - -1.5 836,727 - -0.5 836,729 + +0.2 836,729 + -0.0 836,730 - -0.4 836,730 - +0.4 836,771 + +1.3 836,771 + +0.2 836,771 + -0.7 836,771 + -0.1 836,771 + +0.3 836,771 + -1.7 836,772 - -0.3 836,772 - -0.0 836,772 - +1.4 836,772 - +0.3 836,772 - -0.2 836,809 - -0.5 836,827 - -0.0 836,936 + -1.4 836,947 + +0.7 837,248 + CA264_03595 0.22 -0.7 837,273 - CA264_03595 0.23 -0.5 837,275 + CA264_03595 0.23 -1.6 837,275 + CA264_03595 0.23 +0.5 837,276 - CA264_03595 0.23 -0.4 837,276 - CA264_03595 0.23 -0.3 837,278 + CA264_03595 0.24 +1.8 837,319 - CA264_03595 0.26 +0.1 837,351 - CA264_03595 0.29 -0.3 837,354 + CA264_03595 0.29 -0.4 837,355 - CA264_03595 0.29 -0.4 837,414 + CA264_03595 0.33 -1.0 837,434 - CA264_03595 0.34 +0.3 837,443 + CA264_03595 0.35 -1.1 837,444 - CA264_03595 0.35 +0.4 837,465 + CA264_03595 0.36 +0.3 837,504 - CA264_03595 0.39 -0.4 837,520 + CA264_03595 0.40 -0.6 837,521 - CA264_03595 0.40 -0.8 837,580 - CA264_03595 0.44 +0.1 837,597 + CA264_03595 0.45 +0.3
Or see this region's nucleotide sequence