Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02845 and CA264_02850 are separated by 86 nucleotides CA264_02850 and CA264_02855 are separated by 66 nucleotides CA264_02855 and CA264_02860 are separated by 60 nucleotides CA264_02860 and CA264_02865 are separated by 187 nucleotides
CA264_02845: CA264_02845 - hypothetical protein, at 653,589 to 654,098
_02845
CA264_02850: CA264_02850 - potassium channel protein, at 654,185 to 655,030
_02850
CA264_02855: CA264_02855 - metal-dependent phosphohydrolase, at 655,097 to 655,660
_02855
CA264_02860: CA264_02860 - hypothetical protein, at 655,721 to 655,912
_02860
CA264_02865: CA264_02865 - fatty acid hydroxylase, at 656,100 to 657,062
_02865
Position (kb) 655
656 Strain fitness (log2 ratio) -2
-1
0
1
2 at 654.116 kb on - strand at 654.174 kb on - strand at 654.243 kb on - strand at 654.321 kb on + strand, within CA264_02850 at 654.322 kb on - strand, within CA264_02850 at 654.322 kb on - strand, within CA264_02850 at 654.322 kb on - strand, within CA264_02850 at 654.331 kb on + strand, within CA264_02850 at 654.332 kb on - strand, within CA264_02850 at 654.332 kb on - strand, within CA264_02850 at 654.332 kb on - strand, within CA264_02850 at 654.373 kb on + strand, within CA264_02850 at 654.373 kb on + strand, within CA264_02850 at 654.388 kb on + strand, within CA264_02850 at 654.388 kb on + strand, within CA264_02850 at 654.389 kb on - strand, within CA264_02850 at 654.390 kb on + strand, within CA264_02850 at 654.414 kb on + strand, within CA264_02850 at 654.523 kb on - strand, within CA264_02850 at 654.559 kb on - strand, within CA264_02850 at 654.577 kb on - strand, within CA264_02850 at 654.629 kb on + strand, within CA264_02850 at 654.680 kb on + strand, within CA264_02850 at 654.681 kb on - strand, within CA264_02850 at 654.699 kb on - strand, within CA264_02850 at 654.819 kb on - strand, within CA264_02850 at 654.844 kb on + strand, within CA264_02850 at 654.943 kb on - strand, within CA264_02850 at 655.026 kb on + strand at 655.027 kb on - strand at 655.027 kb on - strand at 655.027 kb on - strand at 655.028 kb on + strand at 655.035 kb on - strand at 655.035 kb on - strand at 655.035 kb on - strand at 655.055 kb on - strand at 655.066 kb on + strand at 655.106 kb on + strand at 655.106 kb on + strand at 655.106 kb on + strand at 655.107 kb on - strand at 655.262 kb on + strand, within CA264_02855 at 655.376 kb on + strand, within CA264_02855 at 655.432 kb on - strand, within CA264_02855 at 655.570 kb on - strand, within CA264_02855 at 655.594 kb on + strand, within CA264_02855 at 655.595 kb on - strand, within CA264_02855 at 655.597 kb on + strand, within CA264_02855 at 655.659 kb on - strand at 655.705 kb on - strand at 655.775 kb on + strand, within CA264_02860 at 655.788 kb on - strand, within CA264_02860 at 655.839 kb on - strand, within CA264_02860 at 655.846 kb on + strand, within CA264_02860 at 655.846 kb on + strand, within CA264_02860 at 655.912 kb on + strand at 655.912 kb on + strand at 655.941 kb on + strand at 655.942 kb on - strand at 656.068 kb on + strand at 656.074 kb on + strand at 656.075 kb on - strand at 656.082 kb on + strand at 656.083 kb on - strand at 656.113 kb on + strand at 656.132 kb on - strand at 656.163 kb on + strand at 656.164 kb on - strand at 656.164 kb on - strand at 656.217 kb on + strand, within CA264_02865 at 656.334 kb on - strand, within CA264_02865 at 656.337 kb on + strand, within CA264_02865 at 656.337 kb on + strand, within CA264_02865 at 656.338 kb on - strand, within CA264_02865 at 656.616 kb on + strand, within CA264_02865 at 656.616 kb on + strand, within CA264_02865 at 656.633 kb on + strand, within CA264_02865 at 656.634 kb on - strand, within CA264_02865
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 654,116 - +2.7 654,174 - -0.7 654,243 - +1.1 654,321 + CA264_02850 0.16 -0.4 654,322 - CA264_02850 0.16 -0.1 654,322 - CA264_02850 0.16 +0.6 654,322 - CA264_02850 0.16 -0.4 654,331 + CA264_02850 0.17 -0.2 654,332 - CA264_02850 0.17 -0.1 654,332 - CA264_02850 0.17 +1.8 654,332 - CA264_02850 0.17 +0.2 654,373 + CA264_02850 0.22 -0.0 654,373 + CA264_02850 0.22 +0.9 654,388 + CA264_02850 0.24 -0.6 654,388 + CA264_02850 0.24 -0.6 654,389 - CA264_02850 0.24 +0.1 654,390 + CA264_02850 0.24 -0.9 654,414 + CA264_02850 0.27 -1.4 654,523 - CA264_02850 0.40 -0.2 654,559 - CA264_02850 0.44 -0.9 654,577 - CA264_02850 0.46 +0.2 654,629 + CA264_02850 0.52 -0.3 654,680 + CA264_02850 0.59 -1.4 654,681 - CA264_02850 0.59 +0.6 654,699 - CA264_02850 0.61 +0.2 654,819 - CA264_02850 0.75 +1.1 654,844 + CA264_02850 0.78 -0.4 654,943 - CA264_02850 0.90 -1.1 655,026 + -2.5 655,027 - -1.6 655,027 - -0.2 655,027 - -0.7 655,028 + +0.7 655,035 - -1.1 655,035 - +0.8 655,035 - -1.0 655,055 - +0.4 655,066 + -0.5 655,106 + +0.2 655,106 + +0.1 655,106 + +0.3 655,107 - -0.8 655,262 + CA264_02855 0.29 -0.4 655,376 + CA264_02855 0.49 -0.5 655,432 - CA264_02855 0.59 -1.3 655,570 - CA264_02855 0.84 -0.0 655,594 + CA264_02855 0.88 -0.2 655,595 - CA264_02855 0.88 -1.5 655,597 + CA264_02855 0.89 +0.3 655,659 - +1.6 655,705 - -0.2 655,775 + CA264_02860 0.28 +0.1 655,788 - CA264_02860 0.35 -0.1 655,839 - CA264_02860 0.61 -0.3 655,846 + CA264_02860 0.65 -0.1 655,846 + CA264_02860 0.65 -0.9 655,912 + +0.5 655,912 + +0.1 655,941 + -0.1 655,942 - -0.3 656,068 + +0.1 656,074 + +0.5 656,075 - +0.0 656,082 + +0.1 656,083 - -1.2 656,113 + -0.5 656,132 - -1.0 656,163 + +0.2 656,164 - +0.1 656,164 - -0.1 656,217 + CA264_02865 0.12 -2.0 656,334 - CA264_02865 0.24 -2.0 656,337 + CA264_02865 0.25 -0.9 656,337 + CA264_02865 0.25 -0.4 656,338 - CA264_02865 0.25 -0.8 656,616 + CA264_02865 0.54 +0.8 656,616 + CA264_02865 0.54 +0.7 656,633 + CA264_02865 0.55 +0.1 656,634 - CA264_02865 0.55 -0.1
Or see this region's nucleotide sequence