Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02740

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02730 and CA264_02735 are separated by 112 nucleotidesCA264_02735 and CA264_02740 are separated by 327 nucleotidesCA264_02740 and CA264_02745 are separated by 83 nucleotides CA264_02730: CA264_02730 - hypothetical protein, at 628,635 to 629,600 _02730 CA264_02735: CA264_02735 - hypothetical protein, at 629,713 to 629,955 _02735 CA264_02740: CA264_02740 - hypothetical protein, at 630,283 to 631,668 _02740 CA264_02745: CA264_02745 - mechanosensitive ion channel protein MscS, at 631,752 to 633,077 _02745 Position (kb) 630 631 632Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 629.283 kb on + strand, within CA264_02730at 629.284 kb on - strand, within CA264_02730at 629.405 kb on - strand, within CA264_02730at 629.405 kb on - strand, within CA264_02730at 629.452 kb on + strand, within CA264_02730at 629.519 kb on + strandat 629.552 kb on + strandat 629.553 kb on - strandat 629.560 kb on - strandat 629.567 kb on + strandat 629.666 kb on - strandat 629.671 kb on - strandat 629.671 kb on - strandat 629.715 kb on - strandat 629.758 kb on - strand, within CA264_02735at 629.765 kb on - strand, within CA264_02735at 629.859 kb on - strand, within CA264_02735at 629.862 kb on - strand, within CA264_02735at 629.862 kb on - strand, within CA264_02735at 629.862 kb on - strand, within CA264_02735at 629.863 kb on + strand, within CA264_02735at 629.863 kb on + strand, within CA264_02735at 629.863 kb on + strand, within CA264_02735at 629.863 kb on + strand, within CA264_02735at 629.863 kb on + strand, within CA264_02735at 629.863 kb on + strand, within CA264_02735at 629.863 kb on + strand, within CA264_02735at 629.863 kb on + strand, within CA264_02735at 629.863 kb on + strand, within CA264_02735at 629.863 kb on + strand, within CA264_02735at 629.864 kb on - strand, within CA264_02735at 629.864 kb on - strand, within CA264_02735at 629.864 kb on - strand, within CA264_02735at 629.867 kb on + strand, within CA264_02735at 629.868 kb on - strand, within CA264_02735at 629.868 kb on - strand, within CA264_02735at 629.934 kb on + strandat 629.934 kb on + strandat 629.934 kb on + strandat 629.935 kb on - strandat 629.938 kb on + strandat 629.939 kb on - strandat 629.939 kb on - strandat 629.945 kb on - strandat 629.967 kb on + strandat 629.968 kb on - strandat 629.975 kb on - strandat 629.975 kb on - strandat 629.982 kb on + strandat 629.983 kb on - strandat 629.990 kb on + strandat 629.991 kb on - strandat 630.009 kb on + strandat 630.010 kb on - strandat 630.013 kb on + strandat 630.014 kb on - strandat 630.014 kb on - strandat 630.023 kb on + strandat 630.031 kb on + strandat 630.250 kb on + strandat 630.251 kb on - strandat 630.252 kb on + strandat 630.252 kb on + strandat 630.252 kb on + strandat 630.252 kb on + strandat 630.252 kb on + strandat 630.253 kb on - strandat 630.253 kb on - strandat 630.253 kb on - strandat 630.255 kb on + strandat 630.255 kb on + strandat 630.255 kb on + strandat 630.256 kb on - strandat 630.285 kb on - strandat 630.330 kb on - strandat 630.330 kb on - strandat 630.341 kb on + strandat 630.390 kb on - strandat 630.393 kb on - strandat 630.396 kb on + strandat 630.409 kb on - strandat 630.504 kb on - strand, within CA264_02740at 630.680 kb on + strand, within CA264_02740at 630.680 kb on + strand, within CA264_02740at 630.680 kb on + strand, within CA264_02740at 630.681 kb on - strand, within CA264_02740at 630.681 kb on - strand, within CA264_02740at 630.975 kb on + strand, within CA264_02740at 630.976 kb on - strand, within CA264_02740at 631.002 kb on - strand, within CA264_02740at 631.157 kb on + strand, within CA264_02740at 631.157 kb on + strand, within CA264_02740at 631.158 kb on - strand, within CA264_02740at 631.236 kb on - strand, within CA264_02740at 631.237 kb on + strand, within CA264_02740at 631.237 kb on + strand, within CA264_02740at 631.238 kb on - strand, within CA264_02740at 631.238 kb on - strand, within CA264_02740at 631.291 kb on + strand, within CA264_02740at 631.291 kb on + strand, within CA264_02740at 631.331 kb on + strand, within CA264_02740at 631.332 kb on - strand, within CA264_02740at 631.332 kb on - strand, within CA264_02740at 631.377 kb on + strand, within CA264_02740at 631.378 kb on - strand, within CA264_02740at 631.397 kb on + strand, within CA264_02740at 631.455 kb on + strand, within CA264_02740at 631.455 kb on + strand, within CA264_02740at 631.459 kb on + strand, within CA264_02740at 631.460 kb on - strand, within CA264_02740at 631.541 kb on + strandat 631.542 kb on - strandat 631.545 kb on - strandat 631.606 kb on + strandat 631.628 kb on + strandat 631.677 kb on + strandat 631.678 kb on - strandat 631.682 kb on + strandat 631.726 kb on - strandat 631.726 kb on - strandat 631.754 kb on - strandat 631.907 kb on + strand, within CA264_02745at 631.951 kb on + strand, within CA264_02745at 631.980 kb on - strand, within CA264_02745at 632.053 kb on + strand, within CA264_02745at 632.054 kb on - strand, within CA264_02745at 632.054 kb on - strand, within CA264_02745at 632.075 kb on + strand, within CA264_02745at 632.132 kb on - strand, within CA264_02745at 632.139 kb on + strand, within CA264_02745at 632.139 kb on + strand, within CA264_02745at 632.164 kb on + strand, within CA264_02745at 632.224 kb on - strand, within CA264_02745at 632.224 kb on - strand, within CA264_02745at 632.312 kb on + strand, within CA264_02745at 632.312 kb on + strand, within CA264_02745at 632.312 kb on + strand, within CA264_02745at 632.312 kb on + strand, within CA264_02745at 632.313 kb on - strand, within CA264_02745at 632.313 kb on - strand, within CA264_02745at 632.313 kb on - strand, within CA264_02745at 632.313 kb on - strand, within CA264_02745at 632.317 kb on + strand, within CA264_02745at 632.318 kb on - strand, within CA264_02745at 632.318 kb on - strand, within CA264_02745at 632.318 kb on - strand, within CA264_02745at 632.320 kb on + strand, within CA264_02745at 632.320 kb on + strand, within CA264_02745at 632.321 kb on - strand, within CA264_02745at 632.321 kb on - strand, within CA264_02745at 632.321 kb on - strand, within CA264_02745at 632.484 kb on + strand, within CA264_02745at 632.485 kb on - strand, within CA264_02745at 632.485 kb on - strand, within CA264_02745at 632.485 kb on - strand, within CA264_02745at 632.578 kb on - strand, within CA264_02745at 632.580 kb on - strand, within CA264_02745at 632.580 kb on - strand, within CA264_02745at 632.599 kb on + strand, within CA264_02745at 632.599 kb on + strand, within CA264_02745at 632.601 kb on + strand, within CA264_02745at 632.602 kb on - strand, within CA264_02745at 632.616 kb on + strand, within CA264_02745at 632.616 kb on + strand, within CA264_02745

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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629,283 + CA264_02730 0.67 -0.9
629,284 - CA264_02730 0.67 -1.0
629,405 - CA264_02730 0.80 +0.5
629,405 - CA264_02730 0.80 -0.1
629,452 + CA264_02730 0.85 +0.4
629,519 + -0.8
629,552 + -1.9
629,553 - -0.3
629,560 - +0.1
629,567 + -0.2
629,666 - +0.6
629,671 - -0.6
629,671 - -0.2
629,715 - +1.1
629,758 - CA264_02735 0.19 +0.3
629,765 - CA264_02735 0.21 +0.2
629,859 - CA264_02735 0.60 -0.4
629,862 - CA264_02735 0.61 -1.0
629,862 - CA264_02735 0.61 -0.0
629,862 - CA264_02735 0.61 -0.8
629,863 + CA264_02735 0.62 +0.0
629,863 + CA264_02735 0.62 -0.6
629,863 + CA264_02735 0.62 +0.1
629,863 + CA264_02735 0.62 -2.7
629,863 + CA264_02735 0.62 -0.9
629,863 + CA264_02735 0.62 -0.0
629,863 + CA264_02735 0.62 -0.4
629,863 + CA264_02735 0.62 -0.3
629,863 + CA264_02735 0.62 +0.4
629,863 + CA264_02735 0.62 -0.1
629,864 - CA264_02735 0.62 +0.9
629,864 - CA264_02735 0.62 -2.8
629,864 - CA264_02735 0.62 +0.2
629,867 + CA264_02735 0.63 +0.3
629,868 - CA264_02735 0.64 +0.9
629,868 - CA264_02735 0.64 -0.7
629,934 + -0.3
629,934 + +0.3
629,934 + -0.9
629,935 - +0.4
629,938 + +0.4
629,939 - -0.4
629,939 - -0.5
629,945 - -0.1
629,967 + -1.1
629,968 - +0.8
629,975 - -0.3
629,975 - -0.1
629,982 + -0.3
629,983 - +0.4
629,990 + +0.8
629,991 - +1.1
630,009 + -1.3
630,010 - +0.9
630,013 + +0.5
630,014 - -1.1
630,014 - -1.7
630,023 + +0.7
630,031 + +0.6
630,250 + +0.7
630,251 - +0.9
630,252 + +0.5
630,252 + -0.8
630,252 + -1.7
630,252 + -0.9
630,252 + -0.2
630,253 - -0.8
630,253 - +0.3
630,253 - -0.1
630,255 + +0.5
630,255 + +0.2
630,255 + -0.7
630,256 - +0.5
630,285 - +0.0
630,330 - +0.4
630,330 - -0.1
630,341 + -0.2
630,390 - -0.5
630,393 - +0.7
630,396 + +1.8
630,409 - +0.1
630,504 - CA264_02740 0.16 -1.9
630,680 + CA264_02740 0.29 +0.5
630,680 + CA264_02740 0.29 +1.8
630,680 + CA264_02740 0.29 +1.6
630,681 - CA264_02740 0.29 -1.0
630,681 - CA264_02740 0.29 +0.1
630,975 + CA264_02740 0.50 -1.7
630,976 - CA264_02740 0.50 +0.8
631,002 - CA264_02740 0.52 -0.0
631,157 + CA264_02740 0.63 -0.5
631,157 + CA264_02740 0.63 -0.4
631,158 - CA264_02740 0.63 -1.6
631,236 - CA264_02740 0.69 -0.7
631,237 + CA264_02740 0.69 -0.1
631,237 + CA264_02740 0.69 +0.8
631,238 - CA264_02740 0.69 +0.2
631,238 - CA264_02740 0.69 -1.1
631,291 + CA264_02740 0.73 +0.5
631,291 + CA264_02740 0.73 +0.6
631,331 + CA264_02740 0.76 +1.5
631,332 - CA264_02740 0.76 -0.8
631,332 - CA264_02740 0.76 -0.1
631,377 + CA264_02740 0.79 -0.1
631,378 - CA264_02740 0.79 +0.4
631,397 + CA264_02740 0.80 +0.6
631,455 + CA264_02740 0.85 +2.0
631,455 + CA264_02740 0.85 -0.5
631,459 + CA264_02740 0.85 +0.4
631,460 - CA264_02740 0.85 +0.0
631,541 + +0.5
631,542 - +2.7
631,545 - -0.1
631,606 + +0.7
631,628 + -0.6
631,677 + -1.5
631,678 - +0.5
631,682 + +0.2
631,726 - -0.2
631,726 - +2.0
631,754 - -0.5
631,907 + CA264_02745 0.12 -1.1
631,951 + CA264_02745 0.15 -0.1
631,980 - CA264_02745 0.17 -1.7
632,053 + CA264_02745 0.23 -0.4
632,054 - CA264_02745 0.23 -0.4
632,054 - CA264_02745 0.23 -1.1
632,075 + CA264_02745 0.24 +1.3
632,132 - CA264_02745 0.29 -0.3
632,139 + CA264_02745 0.29 -0.5
632,139 + CA264_02745 0.29 -0.6
632,164 + CA264_02745 0.31 -0.0
632,224 - CA264_02745 0.36 -0.2
632,224 - CA264_02745 0.36 -0.2
632,312 + CA264_02745 0.42 -2.0
632,312 + CA264_02745 0.42 -1.3
632,312 + CA264_02745 0.42 -0.5
632,312 + CA264_02745 0.42 -0.2
632,313 - CA264_02745 0.42 +1.1
632,313 - CA264_02745 0.42 +0.8
632,313 - CA264_02745 0.42 +1.3
632,313 - CA264_02745 0.42 -0.1
632,317 + CA264_02745 0.43 -0.4
632,318 - CA264_02745 0.43 -0.8
632,318 - CA264_02745 0.43 -0.1
632,318 - CA264_02745 0.43 +0.2
632,320 + CA264_02745 0.43 -1.3
632,320 + CA264_02745 0.43 -0.2
632,321 - CA264_02745 0.43 -2.7
632,321 - CA264_02745 0.43 +0.2
632,321 - CA264_02745 0.43 +0.6
632,484 + CA264_02745 0.55 +0.3
632,485 - CA264_02745 0.55 -0.4
632,485 - CA264_02745 0.55 +1.1
632,485 - CA264_02745 0.55 -0.8
632,578 - CA264_02745 0.62 +0.6
632,580 - CA264_02745 0.62 +0.7
632,580 - CA264_02745 0.62 +2.0
632,599 + CA264_02745 0.64 -0.1
632,599 + CA264_02745 0.64 +0.5
632,601 + CA264_02745 0.64 -0.0
632,602 - CA264_02745 0.64 -1.1
632,616 + CA264_02745 0.65 +0.0
632,616 + CA264_02745 0.65 -0.7

Or see this region's nucleotide sequence