Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02450

Experiment: m.b. Vancomycin 0.016 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_02445 and CA264_02450 are separated by 158 nucleotidesCA264_02450 and CA264_02455 are separated by 65 nucleotidesCA264_02455 and CA264_02460 overlap by 91 nucleotides CA264_02445: CA264_02445 - trehalase-like protein, at 570,579 to 571,853 _02445 CA264_02450: CA264_02450 - hypothetical protein, at 572,012 to 572,236 _02450 CA264_02455: CA264_02455 - hypothetical protein, at 572,302 to 572,970 _02455 CA264_02460: CA264_02460 - sugar dehydrogenase, at 572,880 to 573,689 _02460 Position (kb) 572 573Strain fitness (log2 ratio) -2 -1 0 1 2at 571.023 kb on + strand, within CA264_02445at 571.024 kb on - strand, within CA264_02445at 571.074 kb on - strand, within CA264_02445at 571.074 kb on - strand, within CA264_02445at 571.076 kb on + strand, within CA264_02445at 571.077 kb on - strand, within CA264_02445at 571.077 kb on - strand, within CA264_02445at 571.211 kb on + strand, within CA264_02445at 571.211 kb on - strand, within CA264_02445at 571.212 kb on - strand, within CA264_02445at 571.258 kb on + strand, within CA264_02445at 571.275 kb on + strand, within CA264_02445at 571.275 kb on + strand, within CA264_02445at 571.276 kb on - strand, within CA264_02445at 571.341 kb on + strand, within CA264_02445at 571.383 kb on + strand, within CA264_02445at 571.389 kb on + strand, within CA264_02445at 571.389 kb on + strand, within CA264_02445at 571.390 kb on - strand, within CA264_02445at 571.390 kb on - strand, within CA264_02445at 571.390 kb on - strand, within CA264_02445at 571.390 kb on - strand, within CA264_02445at 571.413 kb on + strand, within CA264_02445at 571.464 kb on - strand, within CA264_02445at 571.600 kb on - strand, within CA264_02445at 571.649 kb on + strand, within CA264_02445at 571.658 kb on + strand, within CA264_02445at 571.658 kb on + strand, within CA264_02445at 571.658 kb on + strand, within CA264_02445at 571.721 kb on + strand, within CA264_02445at 571.722 kb on - strand, within CA264_02445at 571.722 kb on - strand, within CA264_02445at 571.758 kb on + strandat 571.758 kb on + strandat 571.759 kb on - strandat 571.759 kb on - strandat 571.759 kb on - strandat 571.770 kb on - strandat 571.851 kb on + strandat 571.919 kb on + strandat 571.920 kb on - strandat 571.930 kb on - strandat 571.940 kb on - strandat 571.940 kb on - strandat 571.940 kb on - strandat 571.977 kb on + strandat 572.053 kb on - strand, within CA264_02450at 572.053 kb on - strand, within CA264_02450at 572.053 kb on - strand, within CA264_02450at 572.056 kb on - strand, within CA264_02450at 572.071 kb on + strand, within CA264_02450at 572.071 kb on + strand, within CA264_02450at 572.076 kb on + strand, within CA264_02450at 572.078 kb on + strand, within CA264_02450at 572.102 kb on + strand, within CA264_02450at 572.199 kb on + strandat 572.219 kb on + strandat 572.219 kb on + strandat 572.222 kb on + strandat 572.222 kb on + strandat 572.246 kb on - strandat 572.248 kb on - strandat 572.259 kb on - strandat 572.263 kb on - strandat 572.321 kb on + strandat 572.321 kb on + strandat 572.321 kb on + strandat 572.321 kb on + strandat 572.322 kb on - strandat 572.367 kb on + strandat 572.408 kb on + strand, within CA264_02455at 572.409 kb on - strand, within CA264_02455at 572.422 kb on - strand, within CA264_02455at 572.499 kb on + strand, within CA264_02455at 572.535 kb on - strand, within CA264_02455at 572.535 kb on - strand, within CA264_02455at 572.592 kb on + strand, within CA264_02455at 572.614 kb on - strand, within CA264_02455at 572.617 kb on + strand, within CA264_02455at 572.618 kb on - strand, within CA264_02455at 572.618 kb on - strand, within CA264_02455at 572.618 kb on - strand, within CA264_02455at 572.632 kb on - strand, within CA264_02455at 572.632 kb on - strand, within CA264_02455at 572.642 kb on - strand, within CA264_02455at 572.723 kb on - strand, within CA264_02455at 572.723 kb on - strand, within CA264_02455at 572.739 kb on + strand, within CA264_02455at 572.739 kb on + strand, within CA264_02455at 572.740 kb on - strand, within CA264_02455at 572.746 kb on - strand, within CA264_02455at 572.770 kb on + strand, within CA264_02455at 572.833 kb on + strand, within CA264_02455at 572.855 kb on - strand, within CA264_02455at 572.882 kb on - strandat 572.923 kb on + strandat 572.924 kb on - strandat 572.940 kb on + strandat 572.945 kb on - strandat 572.945 kb on - strandat 572.945 kb on - strandat 572.976 kb on + strand, within CA264_02460at 573.086 kb on + strand, within CA264_02460

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
remove
571,023 + CA264_02445 0.35 -0.5
571,024 - CA264_02445 0.35 -0.6
571,074 - CA264_02445 0.39 -0.1
571,074 - CA264_02445 0.39 +1.9
571,076 + CA264_02445 0.39 +0.2
571,077 - CA264_02445 0.39 -0.9
571,077 - CA264_02445 0.39 -0.2
571,211 + CA264_02445 0.50 -0.4
571,211 - CA264_02445 0.50 -0.4
571,212 - CA264_02445 0.50 -1.4
571,258 + CA264_02445 0.53 -0.5
571,275 + CA264_02445 0.55 +1.3
571,275 + CA264_02445 0.55 -0.5
571,276 - CA264_02445 0.55 +0.5
571,341 + CA264_02445 0.60 +0.3
571,383 + CA264_02445 0.63 -0.5
571,389 + CA264_02445 0.64 -0.4
571,389 + CA264_02445 0.64 +0.0
571,390 - CA264_02445 0.64 -0.7
571,390 - CA264_02445 0.64 -0.7
571,390 - CA264_02445 0.64 -0.4
571,390 - CA264_02445 0.64 +0.4
571,413 + CA264_02445 0.65 +0.9
571,464 - CA264_02445 0.69 -0.5
571,600 - CA264_02445 0.80 +0.6
571,649 + CA264_02445 0.84 -1.6
571,658 + CA264_02445 0.85 -1.0
571,658 + CA264_02445 0.85 -0.0
571,658 + CA264_02445 0.85 +2.0
571,721 + CA264_02445 0.90 +0.3
571,722 - CA264_02445 0.90 -1.6
571,722 - CA264_02445 0.90 -0.2
571,758 + -1.2
571,758 + +0.3
571,759 - +0.3
571,759 - -0.0
571,759 - +0.1
571,770 - +0.3
571,851 + +0.7
571,919 + -0.6
571,920 - -0.3
571,930 - -0.4
571,940 - +0.4
571,940 - -0.4
571,940 - -0.1
571,977 + +0.8
572,053 - CA264_02450 0.18 +0.2
572,053 - CA264_02450 0.18 -1.5
572,053 - CA264_02450 0.18 -1.3
572,056 - CA264_02450 0.20 -0.4
572,071 + CA264_02450 0.26 +1.2
572,071 + CA264_02450 0.26 -0.2
572,076 + CA264_02450 0.28 -1.2
572,078 + CA264_02450 0.29 +2.6
572,102 + CA264_02450 0.40 -0.5
572,199 + +1.4
572,219 + -0.4
572,219 + -0.6
572,222 + +0.4
572,222 + +0.8
572,246 - +0.6
572,248 - +1.0
572,259 - -1.9
572,263 - -0.1
572,321 + -1.2
572,321 + +0.5
572,321 + -1.1
572,321 + +0.7
572,322 - -0.2
572,367 + -0.6
572,408 + CA264_02455 0.16 +0.6
572,409 - CA264_02455 0.16 +0.6
572,422 - CA264_02455 0.18 +0.5
572,499 + CA264_02455 0.29 -1.2
572,535 - CA264_02455 0.35 -0.4
572,535 - CA264_02455 0.35 -0.3
572,592 + CA264_02455 0.43 +0.6
572,614 - CA264_02455 0.47 -0.4
572,617 + CA264_02455 0.47 +0.5
572,618 - CA264_02455 0.47 -0.8
572,618 - CA264_02455 0.47 -0.3
572,618 - CA264_02455 0.47 +0.8
572,632 - CA264_02455 0.49 -1.3
572,632 - CA264_02455 0.49 -0.8
572,642 - CA264_02455 0.51 +0.1
572,723 - CA264_02455 0.63 -0.1
572,723 - CA264_02455 0.63 +0.1
572,739 + CA264_02455 0.65 +0.3
572,739 + CA264_02455 0.65 -1.0
572,740 - CA264_02455 0.65 -0.7
572,746 - CA264_02455 0.66 +0.3
572,770 + CA264_02455 0.70 -1.4
572,833 + CA264_02455 0.79 -0.2
572,855 - CA264_02455 0.83 -0.2
572,882 - -0.7
572,923 + -1.2
572,924 - -0.2
572,940 + -0.2
572,945 - -0.2
572,945 - +0.3
572,945 - -0.4
572,976 + CA264_02460 0.12 -2.6
573,086 + CA264_02460 0.25 -0.3

Or see this region's nucleotide sequence