Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02125 and CA264_02130 are separated by 255 nucleotides CA264_02130 and CA264_02135 are separated by 24 nucleotides CA264_02135 and CA264_02140 are separated by 140 nucleotides
CA264_02125: CA264_02125 - alpha/beta hydrolase, at 490,457 to 490,996
_02125
CA264_02130: CA264_02130 - pseudouridine synthase, at 491,252 to 491,926
_02130
CA264_02135: CA264_02135 - GNAT family N-acetyltransferase, at 491,951 to 492,520
_02135
CA264_02140: CA264_02140 - hypothetical protein, at 492,661 to 494,739
_02140
Position (kb) 491
492
493 Strain fitness (log2 ratio) -2
-1
0
1
2 at 491.034 kb on - strand at 491.128 kb on + strand at 491.164 kb on + strand at 491.194 kb on + strand at 491.194 kb on + strand at 491.194 kb on + strand at 491.194 kb on + strand at 491.195 kb on - strand at 491.195 kb on - strand at 491.200 kb on + strand at 491.200 kb on + strand at 491.200 kb on + strand at 491.201 kb on - strand at 491.207 kb on + strand at 491.207 kb on + strand at 491.208 kb on - strand at 491.257 kb on + strand at 491.619 kb on - strand, within CA264_02130 at 491.619 kb on - strand, within CA264_02130 at 491.716 kb on - strand, within CA264_02130 at 491.716 kb on - strand, within CA264_02130 at 491.727 kb on - strand, within CA264_02130 at 491.727 kb on - strand, within CA264_02130 at 491.731 kb on + strand, within CA264_02130 at 491.891 kb on + strand at 491.919 kb on + strand at 491.919 kb on + strand at 491.919 kb on + strand at 491.920 kb on - strand at 491.920 kb on - strand at 491.920 kb on - strand at 491.920 kb on - strand at 491.939 kb on - strand at 491.939 kb on - strand at 491.943 kb on - strand at 491.952 kb on + strand at 491.953 kb on - strand at 492.036 kb on + strand, within CA264_02135 at 492.036 kb on + strand, within CA264_02135 at 492.164 kb on + strand, within CA264_02135 at 492.165 kb on - strand, within CA264_02135 at 492.165 kb on - strand, within CA264_02135 at 492.166 kb on + strand, within CA264_02135 at 492.166 kb on + strand, within CA264_02135 at 492.218 kb on + strand, within CA264_02135 at 492.218 kb on + strand, within CA264_02135 at 492.219 kb on - strand, within CA264_02135 at 492.284 kb on + strand, within CA264_02135 at 492.358 kb on - strand, within CA264_02135 at 492.405 kb on + strand, within CA264_02135 at 492.406 kb on - strand, within CA264_02135 at 492.514 kb on + strand at 492.515 kb on - strand at 492.591 kb on - strand at 492.595 kb on + strand at 492.597 kb on + strand at 492.597 kb on + strand at 492.598 kb on - strand at 492.645 kb on - strand at 492.665 kb on + strand at 492.666 kb on - strand at 492.677 kb on + strand at 492.678 kb on - strand at 492.784 kb on - strand at 492.784 kb on - strand at 492.836 kb on + strand at 492.964 kb on - strand, within CA264_02140 at 492.981 kb on - strand, within CA264_02140 at 493.015 kb on + strand, within CA264_02140 at 493.103 kb on + strand, within CA264_02140 at 493.104 kb on - strand, within CA264_02140 at 493.167 kb on - strand, within CA264_02140 at 493.186 kb on + strand, within CA264_02140 at 493.187 kb on - strand, within CA264_02140 at 493.187 kb on - strand, within CA264_02140 at 493.254 kb on - strand, within CA264_02140 at 493.255 kb on + strand, within CA264_02140 at 493.255 kb on + strand, within CA264_02140 at 493.398 kb on - strand, within CA264_02140 at 493.403 kb on - strand, within CA264_02140 at 493.403 kb on - strand, within CA264_02140 at 493.429 kb on + strand, within CA264_02140 at 493.429 kb on + strand, within CA264_02140 at 493.429 kb on + strand, within CA264_02140 at 493.430 kb on - strand, within CA264_02140 at 493.430 kb on - strand, within CA264_02140 at 493.430 kb on - strand, within CA264_02140
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 491,034 - -0.4 491,128 + -0.1 491,164 + -0.5 491,194 + +0.1 491,194 + -0.9 491,194 + +0.0 491,194 + -0.1 491,195 - -0.9 491,195 - -0.3 491,200 + +0.6 491,200 + +0.2 491,200 + +0.8 491,201 - -0.5 491,207 + -1.2 491,207 + +1.2 491,208 - +0.3 491,257 + +1.0 491,619 - CA264_02130 0.54 -0.5 491,619 - CA264_02130 0.54 +1.1 491,716 - CA264_02130 0.69 +0.8 491,716 - CA264_02130 0.69 +2.1 491,727 - CA264_02130 0.70 -2.2 491,727 - CA264_02130 0.70 +0.1 491,731 + CA264_02130 0.71 -0.1 491,891 + -0.2 491,919 + +0.4 491,919 + -0.7 491,919 + +0.1 491,920 - +0.1 491,920 - +0.4 491,920 - -0.1 491,920 - -0.5 491,939 - +0.1 491,939 - -0.2 491,943 - -0.9 491,952 + -1.4 491,953 - -0.4 492,036 + CA264_02135 0.15 +0.3 492,036 + CA264_02135 0.15 -1.0 492,164 + CA264_02135 0.37 +0.3 492,165 - CA264_02135 0.38 +0.4 492,165 - CA264_02135 0.38 -0.9 492,166 + CA264_02135 0.38 -0.7 492,166 + CA264_02135 0.38 +1.0 492,218 + CA264_02135 0.47 +1.3 492,218 + CA264_02135 0.47 -0.8 492,219 - CA264_02135 0.47 +0.2 492,284 + CA264_02135 0.58 -2.5 492,358 - CA264_02135 0.71 -0.1 492,405 + CA264_02135 0.80 -2.1 492,406 - CA264_02135 0.80 -0.8 492,514 + -0.4 492,515 - -0.2 492,591 - -0.6 492,595 + -0.4 492,597 + +0.5 492,597 + -0.5 492,598 - +0.2 492,645 - +0.5 492,665 + -0.3 492,666 - +0.8 492,677 + +0.4 492,678 - +0.2 492,784 - -0.3 492,784 - -0.4 492,836 + -1.5 492,964 - CA264_02140 0.15 +0.1 492,981 - CA264_02140 0.15 -0.0 493,015 + CA264_02140 0.17 -0.1 493,103 + CA264_02140 0.21 -0.9 493,104 - CA264_02140 0.21 -0.3 493,167 - CA264_02140 0.24 -0.1 493,186 + CA264_02140 0.25 +0.8 493,187 - CA264_02140 0.25 -1.0 493,187 - CA264_02140 0.25 -2.4 493,254 - CA264_02140 0.29 -0.7 493,255 + CA264_02140 0.29 -0.8 493,255 + CA264_02140 0.29 -0.4 493,398 - CA264_02140 0.35 +0.2 493,403 - CA264_02140 0.36 -1.2 493,403 - CA264_02140 0.36 +1.0 493,429 + CA264_02140 0.37 -0.2 493,429 + CA264_02140 0.37 +0.5 493,429 + CA264_02140 0.37 -0.2 493,430 - CA264_02140 0.37 -0.3 493,430 - CA264_02140 0.37 -0.1 493,430 - CA264_02140 0.37 -0.2
Or see this region's nucleotide sequence