Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01575

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01565 and CA264_01570 are separated by 223 nucleotidesCA264_01570 and CA264_01575 are separated by 17 nucleotidesCA264_01575 and CA264_01580 are separated by 141 nucleotidesCA264_01580 and CA264_01585 are separated by 125 nucleotides CA264_01565: CA264_01565 - tellurium resistance protein TerC, at 369,749 to 370,690 _01565 CA264_01570: CA264_01570 - dolichyl-phosphate beta-D-mannosyltransferase, at 370,914 to 371,648 _01570 CA264_01575: CA264_01575 - protoporphyrinogen oxidase, at 371,666 to 373,012 _01575 CA264_01580: CA264_01580 - D,D-heptose 1,7-bisphosphate phosphatase, at 373,154 to 373,675 _01580 CA264_01585: CA264_01585 - hypothetical protein, at 373,801 to 374,118 _01585 Position (kb) 371 372 373 374Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 370.691 kb on - strandat 370.734 kb on + strandat 370.734 kb on + strandat 370.734 kb on + strandat 370.735 kb on - strandat 370.735 kb on - strandat 370.737 kb on - strandat 370.737 kb on - strandat 370.737 kb on - strandat 370.737 kb on - strandat 370.737 kb on - strandat 370.739 kb on + strandat 370.740 kb on - strandat 370.740 kb on - strandat 370.760 kb on - strandat 370.900 kb on + strandat 370.900 kb on + strandat 370.916 kb on - strandat 371.657 kb on + strandat 371.658 kb on - strandat 371.663 kb on + strandat 371.664 kb on - strandat 371.672 kb on - strandat 371.705 kb on - strandat 371.936 kb on - strand, within CA264_01575at 371.995 kb on + strand, within CA264_01575at 372.002 kb on + strand, within CA264_01575at 372.132 kb on + strand, within CA264_01575at 372.132 kb on + strand, within CA264_01575at 372.132 kb on + strand, within CA264_01575at 372.133 kb on - strand, within CA264_01575at 372.133 kb on - strand, within CA264_01575at 372.133 kb on - strand, within CA264_01575at 372.133 kb on - strand, within CA264_01575at 372.133 kb on - strand, within CA264_01575at 372.203 kb on - strand, within CA264_01575at 372.203 kb on - strand, within CA264_01575at 372.204 kb on + strand, within CA264_01575at 372.205 kb on - strand, within CA264_01575at 372.258 kb on + strand, within CA264_01575at 372.259 kb on - strand, within CA264_01575at 372.388 kb on + strand, within CA264_01575at 372.388 kb on + strand, within CA264_01575at 372.388 kb on + strand, within CA264_01575at 372.389 kb on - strand, within CA264_01575at 372.389 kb on - strand, within CA264_01575at 372.389 kb on - strand, within CA264_01575at 372.389 kb on - strand, within CA264_01575at 372.471 kb on + strand, within CA264_01575at 372.564 kb on - strand, within CA264_01575at 372.624 kb on + strand, within CA264_01575at 372.625 kb on - strand, within CA264_01575at 372.806 kb on + strand, within CA264_01575at 372.807 kb on - strand, within CA264_01575at 372.873 kb on + strand, within CA264_01575at 372.873 kb on + strand, within CA264_01575at 372.873 kb on + strand, within CA264_01575at 372.874 kb on - strand, within CA264_01575at 372.874 kb on - strand, within CA264_01575at 372.888 kb on - strandat 372.960 kb on + strandat 372.960 kb on + strandat 372.961 kb on - strandat 372.963 kb on + strandat 372.964 kb on - strandat 372.995 kb on + strandat 372.995 kb on + strandat 372.998 kb on + strandat 372.999 kb on - strandat 373.005 kb on - strandat 373.029 kb on + strandat 373.030 kb on - strandat 373.049 kb on + strandat 373.049 kb on + strandat 373.049 kb on + strandat 373.049 kb on + strandat 373.049 kb on + strandat 373.050 kb on - strandat 373.050 kb on - strandat 373.050 kb on - strandat 373.050 kb on - strandat 373.081 kb on - strandat 373.112 kb on - strandat 373.141 kb on - strandat 373.217 kb on + strand, within CA264_01580at 373.217 kb on + strand, within CA264_01580at 373.219 kb on + strand, within CA264_01580at 373.502 kb on - strand, within CA264_01580at 373.654 kb on + strandat 373.655 kb on - strandat 373.655 kb on - strandat 373.657 kb on - strandat 373.682 kb on + strandat 373.710 kb on + strandat 373.710 kb on + strandat 373.710 kb on + strandat 373.711 kb on - strandat 373.711 kb on - strandat 373.734 kb on - strandat 373.734 kb on - strandat 373.738 kb on - strandat 373.745 kb on - strandat 373.781 kb on + strandat 373.792 kb on + strandat 373.851 kb on + strand, within CA264_01585at 373.888 kb on - strand, within CA264_01585at 373.907 kb on + strand, within CA264_01585at 373.949 kb on + strand, within CA264_01585at 374.010 kb on - strand, within CA264_01585

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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370,691 - -0.0
370,734 + -0.7
370,734 + -0.8
370,734 + -1.0
370,735 - +1.8
370,735 - +0.6
370,737 - -0.3
370,737 - +0.2
370,737 - -0.5
370,737 - -0.4
370,737 - +0.6
370,739 + +0.8
370,740 - -0.7
370,740 - -0.1
370,760 - -0.6
370,900 + +0.3
370,900 + -0.5
370,916 - +0.5
371,657 + -0.2
371,658 - +1.5
371,663 + +0.3
371,664 - +0.2
371,672 - -1.1
371,705 - -0.3
371,936 - CA264_01575 0.20 +0.8
371,995 + CA264_01575 0.24 -0.1
372,002 + CA264_01575 0.25 +0.8
372,132 + CA264_01575 0.35 +0.3
372,132 + CA264_01575 0.35 +0.3
372,132 + CA264_01575 0.35 +0.5
372,133 - CA264_01575 0.35 -1.3
372,133 - CA264_01575 0.35 -0.8
372,133 - CA264_01575 0.35 -0.4
372,133 - CA264_01575 0.35 +0.4
372,133 - CA264_01575 0.35 -0.6
372,203 - CA264_01575 0.40 -0.9
372,203 - CA264_01575 0.40 +0.2
372,204 + CA264_01575 0.40 -1.2
372,205 - CA264_01575 0.40 -1.2
372,258 + CA264_01575 0.44 +0.5
372,259 - CA264_01575 0.44 +0.7
372,388 + CA264_01575 0.54 -0.6
372,388 + CA264_01575 0.54 -0.1
372,388 + CA264_01575 0.54 -0.4
372,389 - CA264_01575 0.54 -0.6
372,389 - CA264_01575 0.54 -1.6
372,389 - CA264_01575 0.54 +0.3
372,389 - CA264_01575 0.54 -1.3
372,471 + CA264_01575 0.60 +1.1
372,564 - CA264_01575 0.67 +0.6
372,624 + CA264_01575 0.71 -0.5
372,625 - CA264_01575 0.71 -0.6
372,806 + CA264_01575 0.85 -0.4
372,807 - CA264_01575 0.85 +0.4
372,873 + CA264_01575 0.90 -0.4
372,873 + CA264_01575 0.90 -0.2
372,873 + CA264_01575 0.90 +1.8
372,874 - CA264_01575 0.90 -0.7
372,874 - CA264_01575 0.90 +0.3
372,888 - -0.0
372,960 + +0.1
372,960 + +0.6
372,961 - -1.4
372,963 + +1.4
372,964 - -0.0
372,995 + +0.3
372,995 + +0.4
372,998 + +0.1
372,999 - -0.7
373,005 - -0.0
373,029 + -0.4
373,030 - +0.9
373,049 + -0.7
373,049 + -0.7
373,049 + -0.3
373,049 + -0.7
373,049 + -0.5
373,050 - -0.8
373,050 - -0.2
373,050 - +0.5
373,050 - +0.7
373,081 - -0.2
373,112 - +0.0
373,141 - +0.4
373,217 + CA264_01580 0.12 -2.6
373,217 + CA264_01580 0.12 -3.4
373,219 + CA264_01580 0.12 -1.2
373,502 - CA264_01580 0.67 -3.0
373,654 + -1.0
373,655 - -1.2
373,655 - -2.0
373,657 - +0.5
373,682 + +0.5
373,710 + -0.1
373,710 + +0.8
373,710 + -0.5
373,711 - +0.8
373,711 - +0.6
373,734 - -0.1
373,734 - -0.2
373,738 - +0.3
373,745 - +0.5
373,781 + -0.6
373,792 + -0.5
373,851 + CA264_01585 0.16 -1.1
373,888 - CA264_01585 0.27 -0.4
373,907 + CA264_01585 0.33 +0.5
373,949 + CA264_01585 0.47 -0.3
374,010 - CA264_01585 0.66 -0.9

Or see this region's nucleotide sequence