Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01245 and CA264_01250 are separated by 125 nucleotides CA264_01250 and CA264_01255 are separated by 177 nucleotides
CA264_01245: CA264_01245 - serine hydrolase, at 295,349 to 296,530
_01245
CA264_01250: CA264_01250 - amidohydrolase, at 296,656 to 299,955
_01250
CA264_01255: CA264_01255 - thioredoxin domain-containing protein, at 300,133 to 302,196
_01255
Position (kb) 296
297
298
299
300 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 295.677 kb on - strand, within CA264_01245 at 295.677 kb on - strand, within CA264_01245 at 295.677 kb on - strand, within CA264_01245 at 295.684 kb on - strand, within CA264_01245 at 295.721 kb on + strand, within CA264_01245 at 295.721 kb on + strand, within CA264_01245 at 295.721 kb on + strand, within CA264_01245 at 295.722 kb on - strand, within CA264_01245 at 295.753 kb on - strand, within CA264_01245 at 295.811 kb on + strand, within CA264_01245 at 295.812 kb on - strand, within CA264_01245 at 295.812 kb on - strand, within CA264_01245 at 295.843 kb on + strand, within CA264_01245 at 295.855 kb on + strand, within CA264_01245 at 295.926 kb on + strand, within CA264_01245 at 295.930 kb on + strand, within CA264_01245 at 295.971 kb on + strand, within CA264_01245 at 295.971 kb on + strand, within CA264_01245 at 296.342 kb on + strand, within CA264_01245 at 296.390 kb on - strand, within CA264_01245 at 296.400 kb on - strand, within CA264_01245 at 296.452 kb on + strand at 296.453 kb on - strand at 296.454 kb on + strand at 296.454 kb on + strand at 296.454 kb on + strand at 296.455 kb on - strand at 296.455 kb on - strand at 296.459 kb on - strand at 296.459 kb on - strand at 296.460 kb on + strand at 296.460 kb on + strand at 296.461 kb on - strand at 296.520 kb on + strand at 296.520 kb on + strand at 296.564 kb on + strand at 296.588 kb on - strand at 296.639 kb on + strand at 296.646 kb on + strand at 296.738 kb on + strand at 296.738 kb on + strand at 296.738 kb on + strand at 296.739 kb on - strand at 296.739 kb on - strand at 296.739 kb on - strand at 296.775 kb on + strand at 296.780 kb on + strand at 296.780 kb on + strand at 296.788 kb on + strand at 296.837 kb on + strand at 296.838 kb on - strand at 296.949 kb on - strand at 296.977 kb on + strand at 296.978 kb on - strand at 297.183 kb on + strand, within CA264_01250 at 297.196 kb on - strand, within CA264_01250 at 297.245 kb on + strand, within CA264_01250 at 297.246 kb on + strand, within CA264_01250 at 297.248 kb on + strand, within CA264_01250 at 297.270 kb on - strand, within CA264_01250 at 297.286 kb on - strand, within CA264_01250 at 297.336 kb on - strand, within CA264_01250 at 297.337 kb on + strand, within CA264_01250 at 297.352 kb on + strand, within CA264_01250 at 297.385 kb on + strand, within CA264_01250 at 297.498 kb on - strand, within CA264_01250 at 297.635 kb on - strand, within CA264_01250 at 297.719 kb on + strand, within CA264_01250 at 297.720 kb on - strand, within CA264_01250 at 297.720 kb on - strand, within CA264_01250 at 297.734 kb on + strand, within CA264_01250 at 297.735 kb on - strand, within CA264_01250 at 297.737 kb on + strand, within CA264_01250 at 297.737 kb on + strand, within CA264_01250 at 297.781 kb on + strand, within CA264_01250 at 297.782 kb on - strand, within CA264_01250 at 297.799 kb on + strand, within CA264_01250 at 297.919 kb on + strand, within CA264_01250 at 297.919 kb on + strand, within CA264_01250 at 297.920 kb on - strand, within CA264_01250 at 297.920 kb on - strand, within CA264_01250 at 297.920 kb on - strand, within CA264_01250 at 297.923 kb on - strand, within CA264_01250 at 297.923 kb on - strand, within CA264_01250 at 297.923 kb on - strand, within CA264_01250 at 297.942 kb on + strand, within CA264_01250 at 297.943 kb on - strand, within CA264_01250 at 298.015 kb on - strand, within CA264_01250 at 298.094 kb on + strand, within CA264_01250 at 298.094 kb on + strand, within CA264_01250 at 298.095 kb on - strand, within CA264_01250 at 298.095 kb on - strand, within CA264_01250 at 298.270 kb on + strand, within CA264_01250 at 298.296 kb on - strand, within CA264_01250 at 298.310 kb on + strand, within CA264_01250 at 298.320 kb on + strand, within CA264_01250 at 298.320 kb on + strand, within CA264_01250 at 298.320 kb on + strand, within CA264_01250 at 298.320 kb on + strand, within CA264_01250 at 298.320 kb on + strand, within CA264_01250 at 298.320 kb on + strand, within CA264_01250 at 298.370 kb on + strand, within CA264_01250 at 298.370 kb on + strand, within CA264_01250 at 298.479 kb on + strand, within CA264_01250 at 298.479 kb on + strand, within CA264_01250 at 298.480 kb on - strand, within CA264_01250 at 298.480 kb on - strand, within CA264_01250 at 298.481 kb on + strand, within CA264_01250 at 298.481 kb on + strand, within CA264_01250 at 298.481 kb on + strand, within CA264_01250 at 298.481 kb on + strand, within CA264_01250 at 298.482 kb on - strand, within CA264_01250 at 298.482 kb on - strand, within CA264_01250 at 298.482 kb on - strand, within CA264_01250 at 298.482 kb on - strand, within CA264_01250 at 298.484 kb on + strand, within CA264_01250 at 298.485 kb on - strand, within CA264_01250 at 298.485 kb on - strand, within CA264_01250 at 298.485 kb on - strand, within CA264_01250 at 298.545 kb on - strand, within CA264_01250 at 298.553 kb on + strand, within CA264_01250 at 298.553 kb on + strand, within CA264_01250 at 298.554 kb on - strand, within CA264_01250 at 298.554 kb on - strand, within CA264_01250 at 298.575 kb on + strand, within CA264_01250 at 298.576 kb on - strand, within CA264_01250 at 298.576 kb on - strand, within CA264_01250 at 298.576 kb on - strand, within CA264_01250 at 298.576 kb on - strand, within CA264_01250 at 298.584 kb on + strand, within CA264_01250 at 298.649 kb on + strand, within CA264_01250 at 298.649 kb on + strand, within CA264_01250 at 298.685 kb on + strand, within CA264_01250 at 298.722 kb on - strand, within CA264_01250 at 298.784 kb on + strand, within CA264_01250 at 298.784 kb on + strand, within CA264_01250 at 298.785 kb on - strand, within CA264_01250 at 298.785 kb on - strand, within CA264_01250 at 298.922 kb on + strand, within CA264_01250 at 298.922 kb on + strand, within CA264_01250 at 298.923 kb on - strand, within CA264_01250 at 298.973 kb on - strand, within CA264_01250 at 299.234 kb on - strand, within CA264_01250 at 299.305 kb on - strand, within CA264_01250 at 299.307 kb on - strand, within CA264_01250 at 299.343 kb on - strand, within CA264_01250 at 299.345 kb on + strand, within CA264_01250 at 299.345 kb on + strand, within CA264_01250 at 299.346 kb on - strand, within CA264_01250 at 299.346 kb on - strand, within CA264_01250 at 299.346 kb on - strand, within CA264_01250 at 299.346 kb on - strand, within CA264_01250 at 299.346 kb on - strand, within CA264_01250 at 299.351 kb on + strand, within CA264_01250 at 299.351 kb on + strand, within CA264_01250 at 299.352 kb on - strand, within CA264_01250 at 299.444 kb on + strand, within CA264_01250 at 299.445 kb on - strand, within CA264_01250 at 299.445 kb on - strand, within CA264_01250 at 299.507 kb on + strand, within CA264_01250 at 299.562 kb on + strand, within CA264_01250 at 299.631 kb on + strand at 299.732 kb on + strand at 299.733 kb on - strand at 299.733 kb on - strand at 299.733 kb on - strand at 299.733 kb on - strand at 299.785 kb on + strand at 299.799 kb on + strand at 299.800 kb on - strand at 299.800 kb on - strand at 299.929 kb on + strand at 299.930 kb on - strand at 299.931 kb on + strand at 299.932 kb on - strand at 299.940 kb on - strand at 299.960 kb on - strand at 299.972 kb on - strand at 299.988 kb on + strand at 299.989 kb on - strand at 300.001 kb on + strand at 300.043 kb on + strand at 300.043 kb on + strand at 300.075 kb on - strand at 300.092 kb on + strand at 300.092 kb on + strand at 300.092 kb on + strand at 300.093 kb on - strand at 300.093 kb on - strand at 300.093 kb on - strand at 300.096 kb on + strand at 300.109 kb on - strand at 300.128 kb on + strand at 300.134 kb on + strand at 300.135 kb on - strand at 300.172 kb on + strand at 300.236 kb on + strand at 300.236 kb on + strand at 300.236 kb on + strand at 300.236 kb on + strand at 300.237 kb on - strand at 300.402 kb on + strand, within CA264_01255 at 300.402 kb on + strand, within CA264_01255 at 300.402 kb on + strand, within CA264_01255 at 300.403 kb on - strand, within CA264_01255 at 300.403 kb on - strand, within CA264_01255 at 300.521 kb on + strand, within CA264_01255 at 300.522 kb on - strand, within CA264_01255 at 300.522 kb on - strand, within CA264_01255 at 300.543 kb on + strand, within CA264_01255 at 300.544 kb on - strand, within CA264_01255 at 300.635 kb on + strand, within CA264_01255 at 300.654 kb on + strand, within CA264_01255 at 300.678 kb on - strand, within CA264_01255 at 300.732 kb on - strand, within CA264_01255 at 300.806 kb on + strand, within CA264_01255 at 300.807 kb on - strand, within CA264_01255 at 300.840 kb on + strand, within CA264_01255 at 300.841 kb on - strand, within CA264_01255 at 300.903 kb on - strand, within CA264_01255 at 300.906 kb on - strand, within CA264_01255
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 295,677 - CA264_01245 0.28 -0.4 295,677 - CA264_01245 0.28 +0.0 295,677 - CA264_01245 0.28 +0.2 295,684 - CA264_01245 0.28 -0.6 295,721 + CA264_01245 0.31 +0.3 295,721 + CA264_01245 0.31 -0.6 295,721 + CA264_01245 0.31 +1.1 295,722 - CA264_01245 0.32 -0.2 295,753 - CA264_01245 0.34 +0.1 295,811 + CA264_01245 0.39 +0.8 295,812 - CA264_01245 0.39 -0.3 295,812 - CA264_01245 0.39 -0.4 295,843 + CA264_01245 0.42 -0.1 295,855 + CA264_01245 0.43 +0.3 295,926 + CA264_01245 0.49 +1.1 295,930 + CA264_01245 0.49 +0.9 295,971 + CA264_01245 0.53 +0.6 295,971 + CA264_01245 0.53 -1.3 296,342 + CA264_01245 0.84 +0.7 296,390 - CA264_01245 0.88 -0.3 296,400 - CA264_01245 0.89 -0.3 296,452 + -0.0 296,453 - -0.7 296,454 + +1.7 296,454 + +0.0 296,454 + +0.0 296,455 - -0.3 296,455 - +0.5 296,459 - -1.5 296,459 - -0.2 296,460 + -0.1 296,460 + -0.7 296,461 - +0.4 296,520 + -3.0 296,520 + -0.8 296,564 + +0.2 296,588 - -0.4 296,639 + -0.0 296,646 + -0.1 296,738 + +0.9 296,738 + -1.2 296,738 + +1.1 296,739 - +0.6 296,739 - -0.2 296,739 - -1.5 296,775 + -0.0 296,780 + -0.6 296,780 + +1.1 296,788 + +0.0 296,837 + -0.0 296,838 - -0.1 296,949 - +0.0 296,977 + +0.2 296,978 - -1.3 297,183 + CA264_01250 0.16 +1.0 297,196 - CA264_01250 0.16 -1.4 297,245 + CA264_01250 0.18 -0.4 297,246 + CA264_01250 0.18 +0.2 297,248 + CA264_01250 0.18 +0.4 297,270 - CA264_01250 0.19 +0.5 297,286 - CA264_01250 0.19 +0.1 297,336 - CA264_01250 0.21 +0.9 297,337 + CA264_01250 0.21 +1.1 297,352 + CA264_01250 0.21 +0.9 297,385 + CA264_01250 0.22 -0.6 297,498 - CA264_01250 0.26 +0.7 297,635 - CA264_01250 0.30 +0.0 297,719 + CA264_01250 0.32 -0.4 297,720 - CA264_01250 0.32 -0.3 297,720 - CA264_01250 0.32 +0.7 297,734 + CA264_01250 0.33 +0.4 297,735 - CA264_01250 0.33 +0.6 297,737 + CA264_01250 0.33 -0.3 297,737 + CA264_01250 0.33 -1.4 297,781 + CA264_01250 0.34 -0.7 297,782 - CA264_01250 0.34 -0.1 297,799 + CA264_01250 0.35 -0.4 297,919 + CA264_01250 0.38 +0.2 297,919 + CA264_01250 0.38 +0.9 297,920 - CA264_01250 0.38 +0.3 297,920 - CA264_01250 0.38 +1.1 297,920 - CA264_01250 0.38 -0.6 297,923 - CA264_01250 0.38 +1.3 297,923 - CA264_01250 0.38 -1.3 297,923 - CA264_01250 0.38 -2.4 297,942 + CA264_01250 0.39 -0.4 297,943 - CA264_01250 0.39 +0.4 298,015 - CA264_01250 0.41 +0.9 298,094 + CA264_01250 0.44 +0.1 298,094 + CA264_01250 0.44 -0.2 298,095 - CA264_01250 0.44 -0.0 298,095 - CA264_01250 0.44 -0.3 298,270 + CA264_01250 0.49 -0.3 298,296 - CA264_01250 0.50 +1.1 298,310 + CA264_01250 0.50 -0.3 298,320 + CA264_01250 0.50 +0.1 298,320 + CA264_01250 0.50 -0.2 298,320 + CA264_01250 0.50 -0.7 298,320 + CA264_01250 0.50 -0.0 298,320 + CA264_01250 0.50 +0.2 298,320 + CA264_01250 0.50 +0.0 298,370 + CA264_01250 0.52 -0.0 298,370 + CA264_01250 0.52 -0.1 298,479 + CA264_01250 0.55 -2.0 298,479 + CA264_01250 0.55 +0.3 298,480 - CA264_01250 0.55 -0.5 298,480 - CA264_01250 0.55 -1.4 298,481 + CA264_01250 0.55 +0.2 298,481 + CA264_01250 0.55 -1.5 298,481 + CA264_01250 0.55 +0.6 298,481 + CA264_01250 0.55 -0.3 298,482 - CA264_01250 0.55 +0.2 298,482 - CA264_01250 0.55 -1.3 298,482 - CA264_01250 0.55 -0.1 298,482 - CA264_01250 0.55 +0.2 298,484 + CA264_01250 0.55 -0.8 298,485 - CA264_01250 0.55 -0.8 298,485 - CA264_01250 0.55 -0.2 298,485 - CA264_01250 0.55 +0.3 298,545 - CA264_01250 0.57 +0.1 298,553 + CA264_01250 0.57 -2.0 298,553 + CA264_01250 0.57 -0.0 298,554 - CA264_01250 0.58 +0.0 298,554 - CA264_01250 0.58 +0.9 298,575 + CA264_01250 0.58 +0.2 298,576 - CA264_01250 0.58 -1.4 298,576 - CA264_01250 0.58 -0.1 298,576 - CA264_01250 0.58 +0.0 298,576 - CA264_01250 0.58 +3.4 298,584 + CA264_01250 0.58 +0.2 298,649 + CA264_01250 0.60 -0.9 298,649 + CA264_01250 0.60 +0.2 298,685 + CA264_01250 0.61 -0.2 298,722 - CA264_01250 0.63 +0.7 298,784 + CA264_01250 0.64 -0.1 298,784 + CA264_01250 0.64 -0.1 298,785 - CA264_01250 0.65 -0.3 298,785 - CA264_01250 0.65 +1.2 298,922 + CA264_01250 0.69 -0.6 298,922 + CA264_01250 0.69 -0.7 298,923 - CA264_01250 0.69 -0.1 298,973 - CA264_01250 0.70 +0.9 299,234 - CA264_01250 0.78 -1.9 299,305 - CA264_01250 0.80 -2.1 299,307 - CA264_01250 0.80 +0.4 299,343 - CA264_01250 0.81 +0.3 299,345 + CA264_01250 0.81 -0.0 299,345 + CA264_01250 0.81 -1.4 299,346 - CA264_01250 0.82 -0.2 299,346 - CA264_01250 0.82 -0.9 299,346 - CA264_01250 0.82 -0.0 299,346 - CA264_01250 0.82 -0.3 299,346 - CA264_01250 0.82 +0.4 299,351 + CA264_01250 0.82 -0.9 299,351 + CA264_01250 0.82 -0.9 299,352 - CA264_01250 0.82 -0.5 299,444 + CA264_01250 0.84 +0.4 299,445 - CA264_01250 0.85 -0.2 299,445 - CA264_01250 0.85 +0.5 299,507 + CA264_01250 0.86 -1.0 299,562 + CA264_01250 0.88 +1.9 299,631 + +0.7 299,732 + -1.0 299,733 - +0.7 299,733 - +0.1 299,733 - +0.3 299,733 - +1.0 299,785 + -0.8 299,799 + -0.2 299,800 - -1.1 299,800 - +0.7 299,929 + +0.9 299,930 - +1.4 299,931 + +0.3 299,932 - +0.1 299,940 - -0.2 299,960 - +0.3 299,972 - +0.6 299,988 + -0.8 299,989 - -0.3 300,001 + -0.2 300,043 + -0.6 300,043 + +1.2 300,075 - -1.1 300,092 + -0.1 300,092 + +0.2 300,092 + +0.9 300,093 - +1.5 300,093 - +0.2 300,093 - +1.3 300,096 + +0.7 300,109 - +0.3 300,128 + -0.2 300,134 + +0.0 300,135 - +0.5 300,172 + -0.5 300,236 + -1.1 300,236 + +0.3 300,236 + +0.5 300,236 + +0.8 300,237 - -0.3 300,402 + CA264_01255 0.13 -0.9 300,402 + CA264_01255 0.13 -1.1 300,402 + CA264_01255 0.13 -0.1 300,403 - CA264_01255 0.13 +1.0 300,403 - CA264_01255 0.13 -0.9 300,521 + CA264_01255 0.19 +1.1 300,522 - CA264_01255 0.19 -1.0 300,522 - CA264_01255 0.19 -0.5 300,543 + CA264_01255 0.20 +0.5 300,544 - CA264_01255 0.20 +0.3 300,635 + CA264_01255 0.24 +0.2 300,654 + CA264_01255 0.25 +0.6 300,678 - CA264_01255 0.26 -0.6 300,732 - CA264_01255 0.29 -0.6 300,806 + CA264_01255 0.33 +0.4 300,807 - CA264_01255 0.33 +0.1 300,840 + CA264_01255 0.34 -0.3 300,841 - CA264_01255 0.34 -0.5 300,903 - CA264_01255 0.37 -0.0 300,906 - CA264_01255 0.37 -0.9
Or see this region's nucleotide sequence