Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00230 and CA264_00235 are separated by 170 nucleotides CA264_00235 and CA264_00240 overlap by 37 nucleotides CA264_00240 and CA264_00245 overlap by 4 nucleotides
CA264_00230: CA264_00230 - hypothetical protein, at 56,977 to 57,624
_00230
CA264_00235: CA264_00235 - hypothetical protein, at 57,795 to 58,112
_00235
CA264_00240: CA264_00240 - hypothetical protein, at 58,076 to 58,672
_00240
CA264_00245: CA264_00245 - hypothetical protein, at 58,669 to 59,571
_00245
Position (kb) 58
59 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 57.102 kb on + strand, within CA264_00230 at 57.275 kb on + strand, within CA264_00230 at 57.276 kb on - strand, within CA264_00230 at 57.276 kb on - strand, within CA264_00230 at 57.276 kb on - strand, within CA264_00230 at 57.290 kb on - strand, within CA264_00230 at 57.543 kb on + strand, within CA264_00230 at 57.544 kb on - strand, within CA264_00230 at 57.544 kb on - strand, within CA264_00230 at 57.579 kb on + strand at 57.586 kb on - strand at 57.586 kb on - strand at 57.587 kb on + strand at 57.588 kb on - strand at 57.636 kb on + strand at 57.636 kb on + strand at 57.637 kb on - strand at 57.637 kb on - strand at 57.658 kb on + strand at 57.659 kb on - strand at 57.668 kb on + strand at 57.669 kb on - strand at 57.669 kb on - strand at 57.669 kb on - strand at 57.669 kb on - strand at 57.669 kb on - strand at 57.672 kb on + strand at 57.673 kb on - strand at 57.678 kb on + strand at 57.702 kb on - strand at 57.703 kb on + strand at 57.704 kb on - strand at 57.739 kb on + strand at 57.740 kb on - strand at 57.740 kb on - strand at 57.740 kb on - strand at 57.744 kb on + strand at 57.744 kb on + strand at 57.745 kb on - strand at 57.745 kb on - strand at 57.800 kb on + strand at 57.801 kb on - strand at 57.802 kb on + strand at 57.803 kb on - strand at 57.803 kb on - strand at 57.818 kb on + strand at 57.819 kb on - strand at 57.930 kb on - strand, within CA264_00235 at 57.986 kb on + strand, within CA264_00235 at 57.987 kb on - strand, within CA264_00235 at 57.987 kb on - strand, within CA264_00235 at 58.029 kb on + strand, within CA264_00235 at 58.029 kb on + strand, within CA264_00235 at 58.030 kb on - strand, within CA264_00235 at 58.030 kb on - strand, within CA264_00235 at 58.064 kb on - strand, within CA264_00235 at 58.099 kb on - strand at 58.264 kb on + strand, within CA264_00240 at 58.321 kb on - strand, within CA264_00240 at 58.365 kb on - strand, within CA264_00240 at 58.485 kb on + strand, within CA264_00240 at 58.493 kb on + strand, within CA264_00240 at 58.522 kb on - strand, within CA264_00240 at 58.588 kb on + strand, within CA264_00240 at 58.635 kb on + strand at 58.663 kb on + strand at 58.664 kb on - strand at 58.782 kb on + strand, within CA264_00245 at 58.971 kb on + strand, within CA264_00245 at 59.002 kb on + strand, within CA264_00245 at 59.002 kb on + strand, within CA264_00245 at 59.134 kb on - strand, within CA264_00245 at 59.226 kb on + strand, within CA264_00245 at 59.313 kb on - strand, within CA264_00245 at 59.447 kb on + strand, within CA264_00245 at 59.448 kb on - strand, within CA264_00245 at 59.513 kb on + strand at 59.513 kb on + strand at 59.513 kb on + strand at 59.548 kb on + strand at 59.560 kb on + strand at 59.561 kb on - strand at 59.561 kb on - strand at 59.585 kb on - strand at 59.600 kb on - strand at 59.600 kb on - strand at 59.601 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 57,102 + CA264_00230 0.19 +0.7 57,275 + CA264_00230 0.46 +0.7 57,276 - CA264_00230 0.46 -0.4 57,276 - CA264_00230 0.46 -1.6 57,276 - CA264_00230 0.46 -0.0 57,290 - CA264_00230 0.48 -2.0 57,543 + CA264_00230 0.87 +0.0 57,544 - CA264_00230 0.88 +0.0 57,544 - CA264_00230 0.88 -1.7 57,579 + +0.4 57,586 - +0.2 57,586 - -1.0 57,587 + +0.5 57,588 - -1.3 57,636 + -3.2 57,636 + -1.0 57,637 - -4.2 57,637 - -1.6 57,658 + +0.1 57,659 - -3.0 57,668 + -4.3 57,669 - -3.0 57,669 - -1.2 57,669 - -3.7 57,669 - -0.1 57,669 - -3.9 57,672 + -1.5 57,673 - -4.6 57,678 + -5.4 57,702 - -4.9 57,703 + -3.0 57,704 - -3.8 57,739 + -4.5 57,740 - -2.5 57,740 - -3.2 57,740 - -4.3 57,744 + -2.0 57,744 + -2.7 57,745 - -3.2 57,745 - -3.0 57,800 + +0.1 57,801 - -1.2 57,802 + -2.7 57,803 - -1.5 57,803 - -2.1 57,818 + -1.5 57,819 - -3.3 57,930 - CA264_00235 0.42 -3.8 57,986 + CA264_00235 0.60 -3.4 57,987 - CA264_00235 0.60 -3.0 57,987 - CA264_00235 0.60 -3.2 58,029 + CA264_00235 0.74 -2.6 58,029 + CA264_00235 0.74 -2.9 58,030 - CA264_00235 0.74 -1.0 58,030 - CA264_00235 0.74 -3.4 58,064 - CA264_00235 0.85 -1.9 58,099 - -3.3 58,264 + CA264_00240 0.31 -0.4 58,321 - CA264_00240 0.41 -3.3 58,365 - CA264_00240 0.48 -3.4 58,485 + CA264_00240 0.69 -0.4 58,493 + CA264_00240 0.70 -1.4 58,522 - CA264_00240 0.75 -2.1 58,588 + CA264_00240 0.86 -0.2 58,635 + -1.7 58,663 + -1.0 58,664 - -2.6 58,782 + CA264_00245 0.13 -0.3 58,971 + CA264_00245 0.33 -0.6 59,002 + CA264_00245 0.37 -1.2 59,002 + CA264_00245 0.37 -0.3 59,134 - CA264_00245 0.51 -1.2 59,226 + CA264_00245 0.62 +1.5 59,313 - CA264_00245 0.71 -0.2 59,447 + CA264_00245 0.86 -2.3 59,448 - CA264_00245 0.86 +0.3 59,513 + +0.2 59,513 + +1.3 59,513 + -0.1 59,548 + -0.3 59,560 + -0.0 59,561 - -0.4 59,561 - -0.2 59,585 - -0.3 59,600 - -0.1 59,600 - +0.5 59,601 + +0.1
Or see this region's nucleotide sequence