Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00220 and CA264_00225 are separated by 2 nucleotides CA264_00225 and CA264_00230 are separated by 354 nucleotides CA264_00230 and CA264_00235 are separated by 170 nucleotides CA264_00235 and CA264_00240 overlap by 37 nucleotides
CA264_00220: CA264_00220 - pyrophosphatase, at 55,835 to 56,161
_00220
CA264_00225: CA264_00225 - D-tyrosyl-tRNA(Tyr) deacylase, at 56,164 to 56,622
_00225
CA264_00230: CA264_00230 - hypothetical protein, at 56,977 to 57,624
_00230
CA264_00235: CA264_00235 - hypothetical protein, at 57,795 to 58,112
_00235
CA264_00240: CA264_00240 - hypothetical protein, at 58,076 to 58,672
_00240
Position (kb) 56
57
58 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 56.072 kb on + strand, within CA264_00220 at 56.073 kb on - strand, within CA264_00220 at 56.088 kb on - strand, within CA264_00220 at 56.128 kb on + strand, within CA264_00220 at 56.170 kb on + strand at 56.306 kb on + strand, within CA264_00225 at 56.306 kb on + strand, within CA264_00225 at 56.339 kb on + strand, within CA264_00225 at 56.339 kb on + strand, within CA264_00225 at 56.340 kb on - strand, within CA264_00225 at 56.340 kb on - strand, within CA264_00225 at 56.340 kb on - strand, within CA264_00225 at 56.344 kb on - strand, within CA264_00225 at 56.344 kb on - strand, within CA264_00225 at 56.346 kb on - strand, within CA264_00225 at 56.346 kb on - strand, within CA264_00225 at 56.427 kb on + strand, within CA264_00225 at 56.431 kb on + strand, within CA264_00225 at 56.432 kb on - strand, within CA264_00225 at 56.432 kb on - strand, within CA264_00225 at 56.432 kb on - strand, within CA264_00225 at 56.442 kb on + strand, within CA264_00225 at 56.567 kb on - strand, within CA264_00225 at 56.652 kb on - strand at 56.676 kb on - strand at 56.681 kb on + strand at 56.682 kb on - strand at 56.841 kb on + strand at 56.842 kb on - strand at 56.866 kb on + strand at 56.867 kb on - strand at 56.867 kb on - strand at 56.874 kb on + strand at 56.874 kb on + strand at 56.875 kb on - strand at 56.877 kb on - strand at 56.927 kb on + strand at 56.983 kb on + strand at 56.984 kb on - strand at 56.984 kb on - strand at 56.987 kb on + strand at 56.987 kb on + strand at 56.997 kb on - strand at 56.997 kb on - strand at 57.030 kb on - strand at 57.044 kb on - strand, within CA264_00230 at 57.045 kb on + strand, within CA264_00230 at 57.046 kb on - strand, within CA264_00230 at 57.046 kb on - strand, within CA264_00230 at 57.102 kb on + strand, within CA264_00230 at 57.275 kb on + strand, within CA264_00230 at 57.276 kb on - strand, within CA264_00230 at 57.276 kb on - strand, within CA264_00230 at 57.276 kb on - strand, within CA264_00230 at 57.290 kb on - strand, within CA264_00230 at 57.543 kb on + strand, within CA264_00230 at 57.544 kb on - strand, within CA264_00230 at 57.544 kb on - strand, within CA264_00230 at 57.579 kb on + strand at 57.586 kb on - strand at 57.586 kb on - strand at 57.587 kb on + strand at 57.588 kb on - strand at 57.636 kb on + strand at 57.636 kb on + strand at 57.637 kb on - strand at 57.637 kb on - strand at 57.658 kb on + strand at 57.659 kb on - strand at 57.668 kb on + strand at 57.669 kb on - strand at 57.669 kb on - strand at 57.669 kb on - strand at 57.669 kb on - strand at 57.669 kb on - strand at 57.672 kb on + strand at 57.673 kb on - strand at 57.678 kb on + strand at 57.702 kb on - strand at 57.703 kb on + strand at 57.704 kb on - strand at 57.739 kb on + strand at 57.740 kb on - strand at 57.740 kb on - strand at 57.740 kb on - strand at 57.744 kb on + strand at 57.744 kb on + strand at 57.745 kb on - strand at 57.745 kb on - strand at 57.800 kb on + strand at 57.801 kb on - strand at 57.802 kb on + strand at 57.803 kb on - strand at 57.803 kb on - strand at 57.818 kb on + strand at 57.819 kb on - strand at 57.930 kb on - strand, within CA264_00235 at 57.986 kb on + strand, within CA264_00235 at 57.987 kb on - strand, within CA264_00235 at 57.987 kb on - strand, within CA264_00235 at 58.029 kb on + strand, within CA264_00235 at 58.029 kb on + strand, within CA264_00235 at 58.030 kb on - strand, within CA264_00235 at 58.030 kb on - strand, within CA264_00235 at 58.064 kb on - strand, within CA264_00235 at 58.099 kb on - strand at 58.264 kb on + strand, within CA264_00240 at 58.321 kb on - strand, within CA264_00240 at 58.365 kb on - strand, within CA264_00240 at 58.485 kb on + strand, within CA264_00240 at 58.493 kb on + strand, within CA264_00240 at 58.522 kb on - strand, within CA264_00240 at 58.588 kb on + strand, within CA264_00240
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 56,072 + CA264_00220 0.72 -2.4 56,073 - CA264_00220 0.73 +0.5 56,088 - CA264_00220 0.77 +0.5 56,128 + CA264_00220 0.90 +0.2 56,170 + +0.0 56,306 + CA264_00225 0.31 -0.0 56,306 + CA264_00225 0.31 -1.4 56,339 + CA264_00225 0.38 -1.2 56,339 + CA264_00225 0.38 +0.0 56,340 - CA264_00225 0.38 +0.8 56,340 - CA264_00225 0.38 +0.5 56,340 - CA264_00225 0.38 -0.5 56,344 - CA264_00225 0.39 +0.6 56,344 - CA264_00225 0.39 +0.0 56,346 - CA264_00225 0.40 -0.3 56,346 - CA264_00225 0.40 +0.4 56,427 + CA264_00225 0.57 +1.2 56,431 + CA264_00225 0.58 +0.5 56,432 - CA264_00225 0.58 +0.0 56,432 - CA264_00225 0.58 +0.5 56,432 - CA264_00225 0.58 -0.5 56,442 + CA264_00225 0.61 +0.4 56,567 - CA264_00225 0.88 +0.3 56,652 - -0.2 56,676 - +0.6 56,681 + -0.2 56,682 - +0.4 56,841 + +1.5 56,842 - -0.1 56,866 + -0.0 56,867 - -0.3 56,867 - -0.4 56,874 + +0.4 56,874 + +0.5 56,875 - -1.3 56,877 - -1.3 56,927 + -1.0 56,983 + +0.4 56,984 - -0.0 56,984 - +0.4 56,987 + -0.7 56,987 + +0.5 56,997 - -1.2 56,997 - +0.3 57,030 - +0.5 57,044 - CA264_00230 0.10 +0.6 57,045 + CA264_00230 0.10 +1.8 57,046 - CA264_00230 0.11 +0.6 57,046 - CA264_00230 0.11 +0.7 57,102 + CA264_00230 0.19 +0.7 57,275 + CA264_00230 0.46 +0.7 57,276 - CA264_00230 0.46 -0.4 57,276 - CA264_00230 0.46 -1.6 57,276 - CA264_00230 0.46 -0.0 57,290 - CA264_00230 0.48 -2.0 57,543 + CA264_00230 0.87 +0.0 57,544 - CA264_00230 0.88 +0.0 57,544 - CA264_00230 0.88 -1.7 57,579 + +0.4 57,586 - +0.2 57,586 - -1.0 57,587 + +0.5 57,588 - -1.3 57,636 + -3.2 57,636 + -1.0 57,637 - -4.2 57,637 - -1.6 57,658 + +0.1 57,659 - -3.0 57,668 + -4.3 57,669 - -3.0 57,669 - -1.2 57,669 - -3.7 57,669 - -0.1 57,669 - -3.9 57,672 + -1.5 57,673 - -4.6 57,678 + -5.4 57,702 - -4.9 57,703 + -3.0 57,704 - -3.8 57,739 + -4.5 57,740 - -2.5 57,740 - -3.2 57,740 - -4.3 57,744 + -2.0 57,744 + -2.7 57,745 - -3.2 57,745 - -3.0 57,800 + +0.1 57,801 - -1.2 57,802 + -2.7 57,803 - -1.5 57,803 - -2.1 57,818 + -1.5 57,819 - -3.3 57,930 - CA264_00235 0.42 -3.8 57,986 + CA264_00235 0.60 -3.4 57,987 - CA264_00235 0.60 -3.0 57,987 - CA264_00235 0.60 -3.2 58,029 + CA264_00235 0.74 -2.6 58,029 + CA264_00235 0.74 -2.9 58,030 - CA264_00235 0.74 -1.0 58,030 - CA264_00235 0.74 -3.4 58,064 - CA264_00235 0.85 -1.9 58,099 - -3.3 58,264 + CA264_00240 0.31 -0.4 58,321 - CA264_00240 0.41 -3.3 58,365 - CA264_00240 0.48 -3.4 58,485 + CA264_00240 0.69 -0.4 58,493 + CA264_00240 0.70 -1.4 58,522 - CA264_00240 0.75 -2.1 58,588 + CA264_00240 0.86 -0.2
Or see this region's nucleotide sequence