Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01745 and PS417_01750 are separated by 38 nucleotides PS417_01750 and PS417_01755 are separated by 161 nucleotides
PS417_01745: PS417_01745 - histidine ammonia-lyase, at 386,938 to 388,446
_01745
PS417_01750: PS417_01750 - histidine ammonia-lyase, at 388,485 to 390,017
_01750
PS417_01755: PS417_01755 - proline-specific permease, at 390,179 to 391,588
_01755
Position (kb) 388
389
390
391 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 387.821 kb on + strand, within PS417_01745 at 387.821 kb on + strand, within PS417_01745 at 387.822 kb on - strand, within PS417_01745 at 388.096 kb on + strand, within PS417_01745 at 388.096 kb on + strand, within PS417_01745 at 388.097 kb on - strand, within PS417_01745 at 388.363 kb on + strand at 388.364 kb on - strand at 388.478 kb on + strand at 388.479 kb on - strand at 388.538 kb on + strand at 388.539 kb on - strand at 388.542 kb on + strand at 388.879 kb on - strand, within PS417_01750 at 388.977 kb on + strand, within PS417_01750 at 388.978 kb on - strand, within PS417_01750 at 389.204 kb on + strand, within PS417_01750 at 389.393 kb on - strand at 389.910 kb on + strand at 390.058 kb on + strand at 390.059 kb on - strand at 390.062 kb on + strand at 390.062 kb on + strand at 390.063 kb on - strand at 390.063 kb on - strand at 390.063 kb on - strand at 390.063 kb on - strand at 390.092 kb on - strand at 390.092 kb on - strand at 390.092 kb on - strand at 390.168 kb on - strand at 390.168 kb on - strand at 390.226 kb on + strand at 390.226 kb on + strand at 390.226 kb on + strand at 390.227 kb on - strand at 390.227 kb on - strand at 390.272 kb on + strand at 390.273 kb on - strand at 390.425 kb on + strand, within PS417_01755 at 390.425 kb on + strand, within PS417_01755 at 390.425 kb on + strand, within PS417_01755 at 390.464 kb on + strand, within PS417_01755 at 390.514 kb on + strand, within PS417_01755 at 390.518 kb on + strand, within PS417_01755 at 390.518 kb on + strand, within PS417_01755 at 390.519 kb on - strand, within PS417_01755 at 390.519 kb on - strand, within PS417_01755 at 390.519 kb on - strand, within PS417_01755 at 390.519 kb on - strand, within PS417_01755 at 390.927 kb on - strand, within PS417_01755 at 390.927 kb on - strand, within PS417_01755 at 390.927 kb on - strand, within PS417_01755 at 390.955 kb on + strand, within PS417_01755 at 390.956 kb on - strand, within PS417_01755 at 390.960 kb on - strand, within PS417_01755
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 387,821 + PS417_01745 0.59 +0.7 387,821 + PS417_01745 0.59 +0.4 387,822 - PS417_01745 0.59 -2.4 388,096 + PS417_01745 0.77 +1.6 388,096 + PS417_01745 0.77 +2.7 388,097 - PS417_01745 0.77 -1.5 388,363 + +2.9 388,364 - -3.0 388,478 + -1.1 388,479 - -2.7 388,538 + -3.5 388,539 - -0.4 388,542 + -3.3 388,879 - PS417_01750 0.26 -3.4 388,977 + PS417_01750 0.32 -2.7 388,978 - PS417_01750 0.32 -1.5 389,204 + PS417_01750 0.47 -2.4 389,393 - +0.5 389,910 + -3.4 390,058 + -0.4 390,059 - -1.3 390,062 + -0.5 390,062 + -1.4 390,063 - -2.6 390,063 - -1.8 390,063 - -3.1 390,063 - +0.5 390,092 - -0.6 390,092 - -0.6 390,092 - -0.6 390,168 - +0.7 390,168 - -1.6 390,226 + -0.1 390,226 + +0.9 390,226 + +0.7 390,227 - -2.6 390,227 - +0.4 390,272 + -0.5 390,273 - -3.0 390,425 + PS417_01755 0.17 +0.9 390,425 + PS417_01755 0.17 +1.4 390,425 + PS417_01755 0.17 +0.4 390,464 + PS417_01755 0.20 +0.4 390,514 + PS417_01755 0.24 +1.0 390,518 + PS417_01755 0.24 -0.1 390,518 + PS417_01755 0.24 +0.7 390,519 - PS417_01755 0.24 -1.9 390,519 - PS417_01755 0.24 -3.4 390,519 - PS417_01755 0.24 -1.8 390,519 - PS417_01755 0.24 -3.8 390,927 - PS417_01755 0.53 -2.8 390,927 - PS417_01755 0.53 -1.4 390,927 - PS417_01755 0.53 -2.3 390,955 + PS417_01755 0.55 +0.7 390,956 - PS417_01755 0.55 +0.0 390,960 - PS417_01755 0.55 -1.1
Or see this region's nucleotide sequence