Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21175

Experiment: m.b. Vancomycin 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_21170 and CA264_21175 are separated by 184 nucleotidesCA264_21175 and CA264_21180 are separated by 181 nucleotides CA264_21170: CA264_21170 - hypothetical protein, at 100,942 to 101,574 _21170 CA264_21175: CA264_21175 - STAS/SEC14 domain-containing protein, at 101,759 to 102,115 _21175 CA264_21180: CA264_21180 - ribulose-phosphate 3-epimerase, at 102,297 to 102,953 _21180 Position (kb) 101 102 103Strain fitness (log2 ratio) -2 -1 0 1 2at 100.764 kb on + strandat 100.767 kb on + strandat 100.768 kb on - strandat 100.830 kb on - strandat 100.838 kb on + strandat 100.839 kb on - strandat 100.894 kb on + strandat 100.894 kb on + strandat 100.895 kb on - strandat 100.895 kb on - strandat 100.895 kb on - strandat 100.895 kb on - strandat 100.924 kb on + strandat 100.933 kb on - strandat 100.933 kb on - strandat 100.933 kb on - strandat 100.941 kb on + strandat 100.957 kb on + strandat 100.986 kb on - strandat 100.995 kb on + strandat 101.019 kb on - strand, within CA264_21170at 101.067 kb on - strand, within CA264_21170at 101.074 kb on + strand, within CA264_21170at 101.075 kb on - strand, within CA264_21170at 101.075 kb on - strand, within CA264_21170at 101.078 kb on + strand, within CA264_21170at 101.127 kb on - strand, within CA264_21170at 101.260 kb on + strand, within CA264_21170at 101.261 kb on - strand, within CA264_21170at 101.275 kb on - strand, within CA264_21170at 101.321 kb on + strand, within CA264_21170at 101.379 kb on - strand, within CA264_21170at 101.417 kb on + strand, within CA264_21170at 101.418 kb on - strand, within CA264_21170at 101.418 kb on - strand, within CA264_21170at 101.475 kb on + strand, within CA264_21170at 101.475 kb on + strand, within CA264_21170at 101.476 kb on - strand, within CA264_21170at 101.506 kb on + strand, within CA264_21170at 101.507 kb on - strand, within CA264_21170at 101.507 kb on - strand, within CA264_21170at 101.507 kb on - strand, within CA264_21170at 101.507 kb on - strand, within CA264_21170at 101.509 kb on + strand, within CA264_21170at 101.509 kb on + strand, within CA264_21170at 101.510 kb on - strand, within CA264_21170at 101.510 kb on - strand, within CA264_21170at 101.514 kb on + strandat 101.515 kb on - strandat 101.515 kb on - strandat 101.565 kb on + strandat 101.565 kb on + strandat 101.575 kb on + strandat 101.592 kb on + strandat 101.592 kb on + strandat 101.592 kb on + strandat 101.592 kb on + strandat 101.593 kb on - strandat 101.593 kb on - strandat 101.593 kb on - strandat 101.593 kb on - strandat 101.593 kb on - strandat 101.615 kb on + strandat 101.668 kb on + strandat 101.668 kb on + strandat 101.669 kb on - strandat 101.669 kb on - strandat 101.669 kb on - strandat 101.669 kb on - strandat 101.672 kb on + strandat 101.713 kb on + strandat 101.713 kb on + strandat 101.714 kb on - strandat 101.714 kb on - strandat 101.844 kb on + strand, within CA264_21175at 101.865 kb on + strand, within CA264_21175at 101.866 kb on - strand, within CA264_21175at 101.866 kb on - strand, within CA264_21175at 101.869 kb on - strand, within CA264_21175at 101.894 kb on + strand, within CA264_21175at 101.895 kb on - strand, within CA264_21175at 102.047 kb on - strand, within CA264_21175at 102.065 kb on + strand, within CA264_21175at 102.154 kb on + strandat 102.154 kb on + strandat 102.155 kb on - strandat 102.173 kb on - strandat 102.175 kb on - strandat 102.180 kb on - strandat 102.408 kb on + strand, within CA264_21180at 102.409 kb on - strand, within CA264_21180at 102.467 kb on + strand, within CA264_21180at 102.467 kb on + strand, within CA264_21180at 102.467 kb on + strand, within CA264_21180at 102.541 kb on - strand, within CA264_21180at 102.541 kb on - strand, within CA264_21180at 102.580 kb on + strand, within CA264_21180at 102.636 kb on + strand, within CA264_21180at 102.646 kb on - strand, within CA264_21180at 102.654 kb on + strand, within CA264_21180at 102.705 kb on + strand, within CA264_21180at 102.706 kb on - strand, within CA264_21180at 102.706 kb on - strand, within CA264_21180at 102.780 kb on - strand, within CA264_21180at 102.838 kb on - strand, within CA264_21180at 102.855 kb on + strand, within CA264_21180at 102.856 kb on - strand, within CA264_21180at 102.856 kb on - strand, within CA264_21180at 102.875 kb on + strand, within CA264_21180at 102.876 kb on - strand, within CA264_21180at 102.876 kb on - strand, within CA264_21180at 102.931 kb on - strandat 102.931 kb on - strandat 102.956 kb on + strandat 103.061 kb on + strandat 103.062 kb on - strandat 103.098 kb on + strandat 103.098 kb on + strandat 103.099 kb on - strandat 103.105 kb on + strandat 103.114 kb on - strandat 103.114 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
remove
100,764 + -0.5
100,767 + +0.3
100,768 - -0.3
100,830 - -0.6
100,838 + -0.1
100,839 - +0.3
100,894 + -0.3
100,894 + -0.3
100,895 - -0.0
100,895 - +0.9
100,895 - -1.2
100,895 - +0.2
100,924 + -0.4
100,933 - +0.6
100,933 - -0.1
100,933 - +1.0
100,941 + +1.5
100,957 + +0.5
100,986 - +0.7
100,995 + +0.2
101,019 - CA264_21170 0.12 +2.4
101,067 - CA264_21170 0.20 +0.2
101,074 + CA264_21170 0.21 -0.4
101,075 - CA264_21170 0.21 -0.7
101,075 - CA264_21170 0.21 +1.1
101,078 + CA264_21170 0.21 -0.2
101,127 - CA264_21170 0.29 -2.3
101,260 + CA264_21170 0.50 +0.2
101,261 - CA264_21170 0.50 -0.3
101,275 - CA264_21170 0.53 -0.2
101,321 + CA264_21170 0.60 -0.0
101,379 - CA264_21170 0.69 +0.5
101,417 + CA264_21170 0.75 -1.4
101,418 - CA264_21170 0.75 -0.0
101,418 - CA264_21170 0.75 +0.5
101,475 + CA264_21170 0.84 -0.2
101,475 + CA264_21170 0.84 -1.0
101,476 - CA264_21170 0.84 +0.1
101,506 + CA264_21170 0.89 +0.0
101,507 - CA264_21170 0.89 +0.5
101,507 - CA264_21170 0.89 +0.3
101,507 - CA264_21170 0.89 +0.8
101,507 - CA264_21170 0.89 -1.0
101,509 + CA264_21170 0.90 +0.1
101,509 + CA264_21170 0.90 +0.9
101,510 - CA264_21170 0.90 -1.4
101,510 - CA264_21170 0.90 -0.3
101,514 + +0.2
101,515 - -0.3
101,515 - -0.7
101,565 + +0.5
101,565 + +1.3
101,575 + +1.1
101,592 + -1.6
101,592 + +0.5
101,592 + -0.3
101,592 + +1.4
101,593 - +0.0
101,593 - -0.0
101,593 - +0.8
101,593 - +0.1
101,593 - +0.7
101,615 + +0.2
101,668 + +0.7
101,668 + -0.2
101,669 - +1.1
101,669 - -0.5
101,669 - -0.5
101,669 - +0.3
101,672 + -0.5
101,713 + +0.0
101,713 + -0.4
101,714 - -0.1
101,714 - -1.1
101,844 + CA264_21175 0.24 -0.5
101,865 + CA264_21175 0.30 -0.8
101,866 - CA264_21175 0.30 +0.0
101,866 - CA264_21175 0.30 -0.2
101,869 - CA264_21175 0.31 +2.0
101,894 + CA264_21175 0.38 -2.7
101,895 - CA264_21175 0.38 +0.7
102,047 - CA264_21175 0.81 -2.7
102,065 + CA264_21175 0.86 -0.3
102,154 + +0.5
102,154 + -0.2
102,155 - +0.2
102,173 - +2.1
102,175 - -0.5
102,180 - +1.1
102,408 + CA264_21180 0.17 +0.3
102,409 - CA264_21180 0.17 -0.2
102,467 + CA264_21180 0.26 -0.7
102,467 + CA264_21180 0.26 +0.2
102,467 + CA264_21180 0.26 -0.5
102,541 - CA264_21180 0.37 +1.0
102,541 - CA264_21180 0.37 +0.3
102,580 + CA264_21180 0.43 +0.1
102,636 + CA264_21180 0.52 +0.4
102,646 - CA264_21180 0.53 -0.3
102,654 + CA264_21180 0.54 -0.4
102,705 + CA264_21180 0.62 -0.8
102,706 - CA264_21180 0.62 +1.8
102,706 - CA264_21180 0.62 +0.3
102,780 - CA264_21180 0.74 -1.0
102,838 - CA264_21180 0.82 -0.4
102,855 + CA264_21180 0.85 +0.4
102,856 - CA264_21180 0.85 +1.3
102,856 - CA264_21180 0.85 -1.6
102,875 + CA264_21180 0.88 +0.0
102,876 - CA264_21180 0.88 -0.4
102,876 - CA264_21180 0.88 -0.1
102,931 - +0.2
102,931 - -1.1
102,956 + +0.8
103,061 + -0.0
103,062 - -2.4
103,098 + -0.7
103,098 + +0.1
103,099 - -0.1
103,105 + +0.1
103,114 - -1.2
103,114 - +0.2

Or see this region's nucleotide sequence