Experiment: m.b. Vancomycin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19600 and CA264_19605 are separated by 652 nucleotides CA264_19605 and CA264_19610 are separated by 36 nucleotides CA264_19610 and CA264_19615 are separated by 193 nucleotides
CA264_19600: CA264_19600 - aldehyde dehydrogenase family protein, at 4,527,931 to 4,529,508
_19600
CA264_19605: CA264_19605 - RNA polymerase, at 4,530,161 to 4,530,718
_19605
CA264_19610: CA264_19610 - hypothetical protein, at 4,530,755 to 4,531,387
_19610
CA264_19615: CA264_19615 - hypothetical protein, at 4,531,581 to 4,532,540
_19615
Position (kb)
4530
4531 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4529.184 kb on + strand, within CA264_19600 at 4529.184 kb on + strand, within CA264_19600 at 4529.425 kb on + strand at 4529.510 kb on - strand at 4529.547 kb on + strand at 4529.547 kb on + strand at 4529.547 kb on + strand at 4529.548 kb on - strand at 4529.553 kb on + strand at 4529.554 kb on - strand at 4529.600 kb on - strand at 4529.609 kb on - strand at 4529.617 kb on - strand at 4529.668 kb on + strand at 4529.669 kb on - strand at 4529.699 kb on + strand at 4529.716 kb on - strand at 4529.716 kb on - strand at 4529.753 kb on + strand at 4529.753 kb on + strand at 4529.834 kb on + strand at 4530.002 kb on - strand at 4530.051 kb on + strand at 4530.082 kb on + strand at 4530.154 kb on + strand at 4530.186 kb on + strand at 4530.187 kb on - strand at 4530.245 kb on + strand, within CA264_19605 at 4530.246 kb on - strand, within CA264_19605 at 4530.254 kb on + strand, within CA264_19605 at 4530.254 kb on + strand, within CA264_19605 at 4530.254 kb on + strand, within CA264_19605 at 4530.265 kb on + strand, within CA264_19605 at 4530.266 kb on - strand, within CA264_19605 at 4530.299 kb on + strand, within CA264_19605 at 4530.362 kb on + strand, within CA264_19605 at 4530.363 kb on - strand, within CA264_19605 at 4530.363 kb on - strand, within CA264_19605 at 4530.419 kb on - strand, within CA264_19605 at 4530.522 kb on + strand, within CA264_19605 at 4530.522 kb on + strand, within CA264_19605 at 4530.544 kb on - strand, within CA264_19605 at 4530.584 kb on + strand, within CA264_19605 at 4530.584 kb on + strand, within CA264_19605 at 4530.729 kb on + strand at 4530.736 kb on + strand at 4530.745 kb on + strand at 4530.745 kb on + strand at 4530.748 kb on + strand at 4530.748 kb on + strand at 4530.748 kb on + strand at 4530.748 kb on + strand at 4530.748 kb on + strand at 4530.749 kb on - strand at 4530.859 kb on + strand, within CA264_19610 at 4531.336 kb on - strand at 4531.348 kb on + strand at 4531.349 kb on - strand at 4531.349 kb on - strand at 4531.352 kb on - strand at 4531.360 kb on + strand at 4531.360 kb on + strand at 4531.591 kb on + strand at 4531.591 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml remove 4,529,184 + CA264_19600 0.79 +1.6 4,529,184 + CA264_19600 0.79 +0.6 4,529,425 + +0.3 4,529,510 - +0.1 4,529,547 + +0.3 4,529,547 + +1.5 4,529,547 + -0.7 4,529,548 - -0.4 4,529,553 + -0.3 4,529,554 - +0.4 4,529,600 - -0.7 4,529,609 - -0.5 4,529,617 - +0.1 4,529,668 + +0.9 4,529,669 - -0.4 4,529,699 + +0.1 4,529,716 - +0.4 4,529,716 - -0.4 4,529,753 + -0.2 4,529,753 + -0.3 4,529,834 + +2.3 4,530,002 - +0.7 4,530,051 + -0.8 4,530,082 + +1.1 4,530,154 + +0.0 4,530,186 + -0.2 4,530,187 - -0.2 4,530,245 + CA264_19605 0.15 -0.6 4,530,246 - CA264_19605 0.15 -0.8 4,530,254 + CA264_19605 0.17 +0.5 4,530,254 + CA264_19605 0.17 -0.2 4,530,254 + CA264_19605 0.17 -1.2 4,530,265 + CA264_19605 0.19 -1.6 4,530,266 - CA264_19605 0.19 -0.4 4,530,299 + CA264_19605 0.25 -0.4 4,530,362 + CA264_19605 0.36 -0.8 4,530,363 - CA264_19605 0.36 +0.3 4,530,363 - CA264_19605 0.36 +0.2 4,530,419 - CA264_19605 0.46 -0.4 4,530,522 + CA264_19605 0.65 -0.4 4,530,522 + CA264_19605 0.65 -0.5 4,530,544 - CA264_19605 0.69 -0.0 4,530,584 + CA264_19605 0.76 +0.7 4,530,584 + CA264_19605 0.76 +1.6 4,530,729 + -0.6 4,530,736 + -1.6 4,530,745 + +0.7 4,530,745 + -0.6 4,530,748 + -0.3 4,530,748 + -0.4 4,530,748 + -2.5 4,530,748 + +0.0 4,530,748 + +0.4 4,530,749 - -0.8 4,530,859 + CA264_19610 0.16 -0.7 4,531,336 - -0.4 4,531,348 + -0.9 4,531,349 - -1.6 4,531,349 - -0.1 4,531,352 - -0.1 4,531,360 + -0.4 4,531,360 + +0.7 4,531,591 + -1.3 4,531,591 + -0.4
Or see this region's nucleotide sequence