Experiment: m.b. Vancomycin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18935 and CA264_18940 are separated by 85 nucleotides CA264_18940 and CA264_18945 overlap by 11 nucleotides CA264_18945 and CA264_18950 are separated by 300 nucleotides CA264_18950 and CA264_18955 are separated by 218 nucleotides CA264_18955 and CA264_18960 are separated by 5 nucleotides
CA264_18935: CA264_18935 - riboflavin biosynthesis protein RibD, at 4,397,033 to 4,397,578
_18935
CA264_18940: CA264_18940 - hypothetical protein, at 4,397,664 to 4,398,071
_18940
CA264_18945: CA264_18945 - hypothetical protein, at 4,398,061 to 4,398,267
_18945
CA264_18950: CA264_18950 - hypothetical protein, at 4,398,568 to 4,398,945
_18950
CA264_18955: CA264_18955 - cytochrome C, at 4,399,164 to 4,399,517
_18955
CA264_18960: CA264_18960 - glucose dehydrogenase, at 4,399,523 to 4,400,980
_18960
Position (kb)
4398
4399 Strain fitness (log2 ratio)
-1
0
1
2 at 4397.612 kb on + strand at 4397.612 kb on + strand at 4397.613 kb on - strand at 4397.613 kb on - strand at 4397.613 kb on - strand at 4397.617 kb on - strand at 4397.646 kb on + strand at 4397.669 kb on + strand at 4397.670 kb on - strand at 4397.696 kb on + strand at 4397.697 kb on - strand at 4397.697 kb on - strand at 4397.773 kb on + strand, within CA264_18940 at 4397.773 kb on + strand, within CA264_18940 at 4397.774 kb on - strand, within CA264_18940 at 4397.774 kb on - strand, within CA264_18940 at 4397.774 kb on - strand, within CA264_18940 at 4397.889 kb on - strand, within CA264_18940 at 4397.902 kb on + strand, within CA264_18940 at 4397.935 kb on + strand, within CA264_18940 at 4397.935 kb on + strand, within CA264_18940 at 4397.935 kb on + strand, within CA264_18940 at 4397.936 kb on - strand, within CA264_18940 at 4397.936 kb on - strand, within CA264_18940 at 4397.980 kb on + strand, within CA264_18940 at 4398.062 kb on + strand at 4398.071 kb on + strand at 4398.101 kb on + strand, within CA264_18945 at 4398.110 kb on - strand, within CA264_18945 at 4398.253 kb on + strand at 4398.254 kb on - strand at 4398.258 kb on + strand at 4398.258 kb on + strand at 4398.258 kb on + strand at 4398.258 kb on + strand at 4398.259 kb on - strand at 4398.259 kb on - strand at 4398.292 kb on + strand at 4398.292 kb on + strand at 4398.292 kb on + strand at 4398.292 kb on + strand at 4398.292 kb on + strand at 4398.293 kb on - strand at 4398.293 kb on - strand at 4398.293 kb on - strand at 4398.293 kb on - strand at 4398.296 kb on + strand at 4398.296 kb on + strand at 4398.296 kb on + strand at 4398.296 kb on + strand at 4398.296 kb on + strand at 4398.297 kb on - strand at 4398.297 kb on - strand at 4398.297 kb on - strand at 4398.297 kb on - strand at 4398.297 kb on - strand at 4398.297 kb on - strand at 4398.297 kb on - strand at 4398.300 kb on + strand at 4398.300 kb on + strand at 4398.301 kb on - strand at 4398.301 kb on - strand at 4398.302 kb on + strand at 4398.302 kb on + strand at 4398.303 kb on - strand at 4398.319 kb on + strand at 4398.417 kb on - strand at 4398.417 kb on - strand at 4398.431 kb on + strand at 4398.431 kb on + strand at 4398.432 kb on - strand at 4398.432 kb on - strand at 4398.434 kb on - strand at 4398.435 kb on + strand at 4398.462 kb on + strand at 4398.486 kb on + strand at 4398.530 kb on + strand at 4398.530 kb on + strand at 4398.563 kb on + strand at 4398.605 kb on + strand at 4398.608 kb on + strand, within CA264_18950 at 4398.615 kb on + strand, within CA264_18950 at 4398.616 kb on - strand, within CA264_18950 at 4398.781 kb on + strand, within CA264_18950 at 4398.781 kb on + strand, within CA264_18950 at 4398.782 kb on - strand, within CA264_18950 at 4398.809 kb on - strand, within CA264_18950 at 4398.849 kb on - strand, within CA264_18950 at 4398.852 kb on - strand, within CA264_18950 at 4398.853 kb on + strand, within CA264_18950 at 4398.854 kb on - strand, within CA264_18950 at 4398.959 kb on - strand at 4398.960 kb on + strand at 4398.960 kb on + strand at 4398.961 kb on - strand at 4398.961 kb on - strand at 4398.961 kb on - strand at 4398.963 kb on + strand at 4398.964 kb on - strand at 4399.045 kb on + strand at 4399.074 kb on + strand at 4399.092 kb on - strand at 4399.130 kb on + strand at 4399.135 kb on - strand at 4399.158 kb on - strand at 4399.165 kb on + strand at 4399.197 kb on - strand at 4399.202 kb on - strand, within CA264_18955 at 4399.202 kb on - strand, within CA264_18955 at 4399.210 kb on - strand, within CA264_18955 at 4399.260 kb on + strand, within CA264_18955 at 4399.343 kb on + strand, within CA264_18955 at 4399.399 kb on - strand, within CA264_18955 at 4399.415 kb on + strand, within CA264_18955 at 4399.433 kb on + strand, within CA264_18955 at 4399.433 kb on + strand, within CA264_18955 at 4399.433 kb on + strand, within CA264_18955 at 4399.433 kb on + strand, within CA264_18955 at 4399.433 kb on + strand, within CA264_18955 at 4399.433 kb on + strand, within CA264_18955 at 4399.525 kb on - strand at 4399.525 kb on - strand at 4399.620 kb on + strand at 4399.703 kb on + strand, within CA264_18960 at 4399.769 kb on - strand, within CA264_18960 at 4399.811 kb on - strand, within CA264_18960 at 4399.911 kb on - strand, within CA264_18960
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml remove 4,397,612 + +1.1 4,397,612 + +0.3 4,397,613 - -0.2 4,397,613 - -0.2 4,397,613 - -1.1 4,397,617 - +0.2 4,397,646 + -0.9 4,397,669 + -0.1 4,397,670 - -0.4 4,397,696 + -0.8 4,397,697 - +0.0 4,397,697 - -0.6 4,397,773 + CA264_18940 0.27 +0.3 4,397,773 + CA264_18940 0.27 -0.8 4,397,774 - CA264_18940 0.27 -0.2 4,397,774 - CA264_18940 0.27 +0.3 4,397,774 - CA264_18940 0.27 +0.8 4,397,889 - CA264_18940 0.55 +0.4 4,397,902 + CA264_18940 0.58 +0.3 4,397,935 + CA264_18940 0.66 +0.3 4,397,935 + CA264_18940 0.66 -0.1 4,397,935 + CA264_18940 0.66 +0.1 4,397,936 - CA264_18940 0.67 +1.0 4,397,936 - CA264_18940 0.67 -0.1 4,397,980 + CA264_18940 0.77 +0.1 4,398,062 + -1.6 4,398,071 + -0.9 4,398,101 + CA264_18945 0.19 -0.5 4,398,110 - CA264_18945 0.24 +0.0 4,398,253 + -1.0 4,398,254 - +0.8 4,398,258 + -0.4 4,398,258 + -0.0 4,398,258 + +1.4 4,398,258 + +0.3 4,398,259 - +0.2 4,398,259 - -0.4 4,398,292 + +0.8 4,398,292 + +0.2 4,398,292 + -0.6 4,398,292 + +0.2 4,398,292 + +1.0 4,398,293 - +0.4 4,398,293 - +0.1 4,398,293 - -0.2 4,398,293 - -0.4 4,398,296 + +0.4 4,398,296 + +0.1 4,398,296 + +2.0 4,398,296 + +0.8 4,398,296 + -0.6 4,398,297 - +0.4 4,398,297 - +1.0 4,398,297 - -0.6 4,398,297 - -1.6 4,398,297 - +1.0 4,398,297 - +0.3 4,398,297 - +0.4 4,398,300 + -0.1 4,398,300 + +0.5 4,398,301 - -0.3 4,398,301 - +0.2 4,398,302 + -0.3 4,398,302 + +0.0 4,398,303 - +0.2 4,398,319 + +0.0 4,398,417 - +0.3 4,398,417 - +0.0 4,398,431 + +0.4 4,398,431 + +0.2 4,398,432 - -0.4 4,398,432 - +1.9 4,398,434 - -0.7 4,398,435 + +0.5 4,398,462 + +0.2 4,398,486 + +0.0 4,398,530 + -0.2 4,398,530 + +0.4 4,398,563 + +1.0 4,398,605 + +0.5 4,398,608 + CA264_18950 0.11 +0.2 4,398,615 + CA264_18950 0.12 +1.0 4,398,616 - CA264_18950 0.13 +0.4 4,398,781 + CA264_18950 0.56 +0.2 4,398,781 + CA264_18950 0.56 -0.2 4,398,782 - CA264_18950 0.57 -0.6 4,398,809 - CA264_18950 0.64 -0.2 4,398,849 - CA264_18950 0.74 +1.1 4,398,852 - CA264_18950 0.75 +0.0 4,398,853 + CA264_18950 0.75 -0.2 4,398,854 - CA264_18950 0.76 -0.1 4,398,959 - +0.3 4,398,960 + -0.2 4,398,960 + +0.2 4,398,961 - -0.0 4,398,961 - +0.1 4,398,961 - -0.2 4,398,963 + +0.3 4,398,964 - +0.5 4,399,045 + -0.0 4,399,074 + +0.7 4,399,092 - +0.3 4,399,130 + +1.7 4,399,135 - -0.0 4,399,158 - -0.2 4,399,165 + +0.1 4,399,197 - -0.0 4,399,202 - CA264_18955 0.11 +0.5 4,399,202 - CA264_18955 0.11 -0.6 4,399,210 - CA264_18955 0.13 -0.9 4,399,260 + CA264_18955 0.27 -0.0 4,399,343 + CA264_18955 0.51 +0.1 4,399,399 - CA264_18955 0.66 +0.1 4,399,415 + CA264_18955 0.71 -0.4 4,399,433 + CA264_18955 0.76 -0.5 4,399,433 + CA264_18955 0.76 +0.6 4,399,433 + CA264_18955 0.76 -0.9 4,399,433 + CA264_18955 0.76 -0.9 4,399,433 + CA264_18955 0.76 +0.6 4,399,433 + CA264_18955 0.76 +0.1 4,399,525 - +0.7 4,399,525 - +0.8 4,399,620 + -0.7 4,399,703 + CA264_18960 0.12 -0.6 4,399,769 - CA264_18960 0.17 -0.2 4,399,811 - CA264_18960 0.20 +0.2 4,399,911 - CA264_18960 0.27 +0.5
Or see this region's nucleotide sequence