Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18325

Experiment: m.b. Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18315 and CA264_18320 are separated by 91 nucleotidesCA264_18320 and CA264_18325 are separated by 52 nucleotidesCA264_18325 and CA264_18330 are separated by 169 nucleotidesCA264_18330 and CA264_18335 are separated by 160 nucleotides CA264_18315: CA264_18315 - alkene reductase, at 4,258,804 to 4,259,907 _18315 CA264_18320: CA264_18320 - 2,5-didehydrogluconate reductase, at 4,259,999 to 4,260,817 _18320 CA264_18325: CA264_18325 - MarR family transcriptional regulator, at 4,260,870 to 4,261,319 _18325 CA264_18330: CA264_18330 - hypothetical protein, at 4,261,489 to 4,261,938 _18330 CA264_18335: CA264_18335 - peptidase M16, at 4,262,099 to 4,263,358 _18335 Position (kb) 4260 4261 4262Strain fitness (log2 ratio) -2 -1 0 1 2at 4259.887 kb on + strandat 4259.887 kb on + strandat 4259.888 kb on - strandat 4259.890 kb on + strandat 4259.891 kb on - strandat 4259.891 kb on - strandat 4259.970 kb on - strandat 4260.062 kb on + strandat 4260.062 kb on + strandat 4260.155 kb on + strand, within CA264_18320at 4260.211 kb on - strand, within CA264_18320at 4260.306 kb on + strand, within CA264_18320at 4260.306 kb on + strand, within CA264_18320at 4260.312 kb on + strand, within CA264_18320at 4260.342 kb on + strand, within CA264_18320at 4260.435 kb on + strand, within CA264_18320at 4260.471 kb on + strand, within CA264_18320at 4260.471 kb on + strand, within CA264_18320at 4260.472 kb on - strand, within CA264_18320at 4260.472 kb on - strand, within CA264_18320at 4260.599 kb on + strand, within CA264_18320at 4260.678 kb on + strand, within CA264_18320at 4260.678 kb on + strand, within CA264_18320at 4260.678 kb on + strand, within CA264_18320at 4260.691 kb on + strand, within CA264_18320at 4260.696 kb on - strand, within CA264_18320at 4260.728 kb on + strand, within CA264_18320at 4260.728 kb on + strand, within CA264_18320at 4260.739 kb on - strandat 4261.299 kb on + strandat 4261.312 kb on - strandat 4261.334 kb on - strandat 4261.399 kb on - strandat 4261.399 kb on - strandat 4261.399 kb on - strandat 4261.402 kb on + strandat 4261.403 kb on - strandat 4261.404 kb on + strandat 4261.422 kb on - strandat 4261.467 kb on + strandat 4261.574 kb on - strand, within CA264_18330at 4261.603 kb on + strand, within CA264_18330at 4261.603 kb on + strand, within CA264_18330at 4261.661 kb on - strand, within CA264_18330at 4261.661 kb on - strand, within CA264_18330at 4261.661 kb on - strand, within CA264_18330at 4261.694 kb on + strand, within CA264_18330at 4261.739 kb on + strand, within CA264_18330at 4261.772 kb on + strand, within CA264_18330at 4261.853 kb on - strand, within CA264_18330at 4261.953 kb on - strandat 4262.031 kb on + strandat 4262.031 kb on + strandat 4262.031 kb on + strandat 4262.031 kb on + strandat 4262.080 kb on + strandat 4262.080 kb on + strandat 4262.081 kb on - strandat 4262.081 kb on - strandat 4262.136 kb on + strandat 4262.265 kb on + strand, within CA264_18335

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
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4,259,887 + +0.2
4,259,887 + -1.1
4,259,888 - -0.3
4,259,890 + +0.9
4,259,891 - -0.6
4,259,891 - +0.4
4,259,970 - -0.0
4,260,062 + +0.1
4,260,062 + +0.1
4,260,155 + CA264_18320 0.19 +0.6
4,260,211 - CA264_18320 0.26 +0.6
4,260,306 + CA264_18320 0.37 -0.9
4,260,306 + CA264_18320 0.37 +0.1
4,260,312 + CA264_18320 0.38 -0.2
4,260,342 + CA264_18320 0.42 -0.9
4,260,435 + CA264_18320 0.53 +0.2
4,260,471 + CA264_18320 0.58 -0.4
4,260,471 + CA264_18320 0.58 +0.1
4,260,472 - CA264_18320 0.58 +1.0
4,260,472 - CA264_18320 0.58 -0.4
4,260,599 + CA264_18320 0.73 +0.3
4,260,678 + CA264_18320 0.83 +0.1
4,260,678 + CA264_18320 0.83 -0.4
4,260,678 + CA264_18320 0.83 -0.1
4,260,691 + CA264_18320 0.84 +0.3
4,260,696 - CA264_18320 0.85 +0.2
4,260,728 + CA264_18320 0.89 -0.3
4,260,728 + CA264_18320 0.89 +0.6
4,260,739 - +0.0
4,261,299 + +0.5
4,261,312 - -0.4
4,261,334 - -0.4
4,261,399 - -1.0
4,261,399 - +0.1
4,261,399 - -0.2
4,261,402 + -0.4
4,261,403 - -1.0
4,261,404 + +0.0
4,261,422 - -0.2
4,261,467 + +0.0
4,261,574 - CA264_18330 0.19 -0.0
4,261,603 + CA264_18330 0.25 -0.7
4,261,603 + CA264_18330 0.25 +0.9
4,261,661 - CA264_18330 0.38 +0.2
4,261,661 - CA264_18330 0.38 -1.8
4,261,661 - CA264_18330 0.38 +0.3
4,261,694 + CA264_18330 0.46 +0.6
4,261,739 + CA264_18330 0.56 +0.1
4,261,772 + CA264_18330 0.63 +0.3
4,261,853 - CA264_18330 0.81 -0.1
4,261,953 - +1.5
4,262,031 + -1.6
4,262,031 + -0.7
4,262,031 + -0.4
4,262,031 + +0.6
4,262,080 + -0.3
4,262,080 + -0.7
4,262,081 - +0.1
4,262,081 - +1.1
4,262,136 + -0.3
4,262,265 + CA264_18335 0.13 +2.3

Or see this region's nucleotide sequence