Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18315

Experiment: m.b. Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18305 and CA264_18310 are separated by 307 nucleotidesCA264_18310 and CA264_18315 are separated by 429 nucleotidesCA264_18315 and CA264_18320 are separated by 91 nucleotidesCA264_18320 and CA264_18325 are separated by 52 nucleotides CA264_18305: CA264_18305 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 4,257,447 to 4,257,932 _18305 CA264_18310: CA264_18310 - hypothetical protein, at 4,258,240 to 4,258,374 _18310 CA264_18315: CA264_18315 - alkene reductase, at 4,258,804 to 4,259,907 _18315 CA264_18320: CA264_18320 - 2,5-didehydrogluconate reductase, at 4,259,999 to 4,260,817 _18320 CA264_18325: CA264_18325 - MarR family transcriptional regulator, at 4,260,870 to 4,261,319 _18325 Position (kb) 4258 4259 4260Strain fitness (log2 ratio) -2 -1 0 1 2at 4257.945 kb on - strandat 4257.945 kb on - strandat 4257.945 kb on - strandat 4257.948 kb on + strandat 4257.948 kb on + strandat 4257.948 kb on + strandat 4257.948 kb on + strandat 4257.948 kb on + strandat 4257.949 kb on - strandat 4257.949 kb on - strandat 4257.949 kb on - strandat 4257.949 kb on - strandat 4257.949 kb on - strandat 4257.955 kb on + strandat 4257.955 kb on + strandat 4257.955 kb on + strandat 4257.958 kb on + strandat 4257.992 kb on + strandat 4257.992 kb on + strandat 4257.993 kb on - strandat 4257.993 kb on - strandat 4257.996 kb on + strandat 4257.997 kb on - strandat 4258.008 kb on - strandat 4258.019 kb on + strandat 4258.019 kb on + strandat 4258.019 kb on + strandat 4258.020 kb on - strandat 4258.043 kb on + strandat 4258.062 kb on - strandat 4258.066 kb on + strandat 4258.151 kb on - strandat 4258.173 kb on + strandat 4258.235 kb on + strandat 4258.235 kb on + strandat 4258.236 kb on - strandat 4258.373 kb on - strandat 4258.385 kb on - strandat 4258.388 kb on + strandat 4258.413 kb on - strandat 4258.432 kb on - strandat 4258.432 kb on - strandat 4258.435 kb on + strandat 4258.436 kb on - strandat 4258.437 kb on + strandat 4258.437 kb on + strandat 4258.437 kb on + strandat 4258.438 kb on - strandat 4258.506 kb on + strandat 4258.507 kb on - strandat 4258.507 kb on - strandat 4258.548 kb on + strandat 4258.658 kb on + strandat 4258.659 kb on - strandat 4258.659 kb on - strandat 4258.663 kb on - strandat 4258.704 kb on + strandat 4258.704 kb on + strandat 4258.705 kb on - strandat 4258.706 kb on + strandat 4258.707 kb on - strandat 4258.722 kb on + strandat 4258.723 kb on - strandat 4258.782 kb on + strandat 4258.783 kb on - strandat 4258.784 kb on + strandat 4258.787 kb on - strandat 4258.841 kb on + strandat 4258.869 kb on + strandat 4259.004 kb on + strand, within CA264_18315at 4259.036 kb on + strand, within CA264_18315at 4259.036 kb on + strand, within CA264_18315at 4259.089 kb on + strand, within CA264_18315at 4259.089 kb on + strand, within CA264_18315at 4259.090 kb on - strand, within CA264_18315at 4259.090 kb on - strand, within CA264_18315at 4259.157 kb on - strand, within CA264_18315at 4259.251 kb on + strand, within CA264_18315at 4259.334 kb on + strand, within CA264_18315at 4259.335 kb on - strand, within CA264_18315at 4259.335 kb on - strand, within CA264_18315at 4259.383 kb on + strand, within CA264_18315at 4259.455 kb on - strand, within CA264_18315at 4259.455 kb on - strand, within CA264_18315at 4259.458 kb on - strand, within CA264_18315at 4259.497 kb on - strand, within CA264_18315at 4259.513 kb on + strand, within CA264_18315at 4259.611 kb on - strand, within CA264_18315at 4259.614 kb on + strand, within CA264_18315at 4259.682 kb on - strand, within CA264_18315at 4259.700 kb on + strand, within CA264_18315at 4259.700 kb on + strand, within CA264_18315at 4259.700 kb on + strand, within CA264_18315at 4259.701 kb on - strand, within CA264_18315at 4259.701 kb on - strand, within CA264_18315at 4259.702 kb on + strand, within CA264_18315at 4259.703 kb on - strand, within CA264_18315at 4259.707 kb on + strand, within CA264_18315at 4259.708 kb on - strand, within CA264_18315at 4259.708 kb on - strand, within CA264_18315at 4259.708 kb on - strand, within CA264_18315at 4259.708 kb on - strand, within CA264_18315at 4259.742 kb on + strand, within CA264_18315at 4259.742 kb on + strand, within CA264_18315at 4259.772 kb on - strand, within CA264_18315at 4259.774 kb on + strand, within CA264_18315at 4259.845 kb on - strandat 4259.887 kb on + strandat 4259.887 kb on + strandat 4259.888 kb on - strandat 4259.890 kb on + strandat 4259.891 kb on - strandat 4259.891 kb on - strandat 4259.970 kb on - strandat 4260.062 kb on + strandat 4260.062 kb on + strandat 4260.155 kb on + strand, within CA264_18320at 4260.211 kb on - strand, within CA264_18320at 4260.306 kb on + strand, within CA264_18320at 4260.306 kb on + strand, within CA264_18320at 4260.312 kb on + strand, within CA264_18320at 4260.342 kb on + strand, within CA264_18320at 4260.435 kb on + strand, within CA264_18320at 4260.471 kb on + strand, within CA264_18320at 4260.471 kb on + strand, within CA264_18320at 4260.472 kb on - strand, within CA264_18320at 4260.472 kb on - strand, within CA264_18320at 4260.599 kb on + strand, within CA264_18320at 4260.678 kb on + strand, within CA264_18320at 4260.678 kb on + strand, within CA264_18320at 4260.678 kb on + strand, within CA264_18320at 4260.691 kb on + strand, within CA264_18320at 4260.696 kb on - strand, within CA264_18320at 4260.728 kb on + strand, within CA264_18320at 4260.728 kb on + strand, within CA264_18320at 4260.739 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
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4,257,945 - -0.0
4,257,945 - +0.9
4,257,945 - -0.2
4,257,948 + +1.2
4,257,948 + +0.6
4,257,948 + +0.5
4,257,948 + +0.4
4,257,948 + -0.0
4,257,949 - +0.9
4,257,949 - -1.0
4,257,949 - -0.4
4,257,949 - +2.1
4,257,949 - -0.5
4,257,955 + -0.1
4,257,955 + -0.6
4,257,955 + +0.5
4,257,958 + -1.3
4,257,992 + -0.3
4,257,992 + -0.4
4,257,993 - -0.6
4,257,993 - -1.1
4,257,996 + +0.2
4,257,997 - -0.5
4,258,008 - -1.0
4,258,019 + +0.2
4,258,019 + -0.7
4,258,019 + -0.4
4,258,020 - -0.7
4,258,043 + +0.5
4,258,062 - -1.8
4,258,066 + +0.4
4,258,151 - -0.5
4,258,173 + +0.9
4,258,235 + -1.2
4,258,235 + -0.3
4,258,236 - -1.8
4,258,373 - -0.5
4,258,385 - -2.2
4,258,388 + +0.1
4,258,413 - +0.7
4,258,432 - +0.1
4,258,432 - +0.2
4,258,435 + -0.1
4,258,436 - +0.0
4,258,437 + -0.1
4,258,437 + +0.6
4,258,437 + -0.2
4,258,438 - -0.1
4,258,506 + +0.1
4,258,507 - -0.6
4,258,507 - +0.8
4,258,548 + -0.1
4,258,658 + +0.0
4,258,659 - -1.2
4,258,659 - -0.8
4,258,663 - +1.7
4,258,704 + -0.8
4,258,704 + +0.8
4,258,705 - -0.7
4,258,706 + -0.3
4,258,707 - -0.7
4,258,722 + -1.6
4,258,723 - -0.4
4,258,782 + -2.3
4,258,783 - -0.7
4,258,784 + +0.4
4,258,787 - +0.1
4,258,841 + -0.2
4,258,869 + +0.4
4,259,004 + CA264_18315 0.18 -2.0
4,259,036 + CA264_18315 0.21 +0.4
4,259,036 + CA264_18315 0.21 -0.1
4,259,089 + CA264_18315 0.26 -0.9
4,259,089 + CA264_18315 0.26 -0.0
4,259,090 - CA264_18315 0.26 +0.3
4,259,090 - CA264_18315 0.26 -0.1
4,259,157 - CA264_18315 0.32 +0.1
4,259,251 + CA264_18315 0.40 +0.6
4,259,334 + CA264_18315 0.48 -0.4
4,259,335 - CA264_18315 0.48 -1.2
4,259,335 - CA264_18315 0.48 -0.1
4,259,383 + CA264_18315 0.52 +0.1
4,259,455 - CA264_18315 0.59 +1.0
4,259,455 - CA264_18315 0.59 -0.0
4,259,458 - CA264_18315 0.59 +1.1
4,259,497 - CA264_18315 0.63 +0.7
4,259,513 + CA264_18315 0.64 -0.3
4,259,611 - CA264_18315 0.73 +0.9
4,259,614 + CA264_18315 0.73 -1.1
4,259,682 - CA264_18315 0.80 +0.1
4,259,700 + CA264_18315 0.81 +0.4
4,259,700 + CA264_18315 0.81 +1.2
4,259,700 + CA264_18315 0.81 -0.6
4,259,701 - CA264_18315 0.81 -0.0
4,259,701 - CA264_18315 0.81 +1.3
4,259,702 + CA264_18315 0.81 -0.3
4,259,703 - CA264_18315 0.81 -0.0
4,259,707 + CA264_18315 0.82 -0.2
4,259,708 - CA264_18315 0.82 -0.2
4,259,708 - CA264_18315 0.82 -0.6
4,259,708 - CA264_18315 0.82 +0.6
4,259,708 - CA264_18315 0.82 -0.6
4,259,742 + CA264_18315 0.85 +0.1
4,259,742 + CA264_18315 0.85 -0.1
4,259,772 - CA264_18315 0.88 -0.0
4,259,774 + CA264_18315 0.88 -0.6
4,259,845 - -0.9
4,259,887 + +0.2
4,259,887 + -1.1
4,259,888 - -0.3
4,259,890 + +0.9
4,259,891 - -0.6
4,259,891 - +0.4
4,259,970 - -0.0
4,260,062 + +0.1
4,260,062 + +0.1
4,260,155 + CA264_18320 0.19 +0.6
4,260,211 - CA264_18320 0.26 +0.6
4,260,306 + CA264_18320 0.37 -0.9
4,260,306 + CA264_18320 0.37 +0.1
4,260,312 + CA264_18320 0.38 -0.2
4,260,342 + CA264_18320 0.42 -0.9
4,260,435 + CA264_18320 0.53 +0.2
4,260,471 + CA264_18320 0.58 -0.4
4,260,471 + CA264_18320 0.58 +0.1
4,260,472 - CA264_18320 0.58 +1.0
4,260,472 - CA264_18320 0.58 -0.4
4,260,599 + CA264_18320 0.73 +0.3
4,260,678 + CA264_18320 0.83 +0.1
4,260,678 + CA264_18320 0.83 -0.4
4,260,678 + CA264_18320 0.83 -0.1
4,260,691 + CA264_18320 0.84 +0.3
4,260,696 - CA264_18320 0.85 +0.2
4,260,728 + CA264_18320 0.89 -0.3
4,260,728 + CA264_18320 0.89 +0.6
4,260,739 - +0.0

Or see this region's nucleotide sequence