Experiment: m.b. Vancomycin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18075 and CA264_18080 are separated by 146 nucleotides CA264_18080 and CA264_18085 are separated by 149 nucleotides
CA264_18075: CA264_18075 - 3-dehydro-L-gulonate 2-dehydrogenase, at 4,204,115 to 4,205,119
_18075
CA264_18080: CA264_18080 - hypothetical protein, at 4,205,266 to 4,205,856
_18080
CA264_18085: CA264_18085 - 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase, at 4,206,006 to 4,206,788
_18085
Position (kb)
4205
4206 Strain fitness (log2 ratio)
-2
-1
0
1 at 4204.312 kb on + strand, within CA264_18075 at 4204.312 kb on + strand, within CA264_18075 at 4204.312 kb on + strand, within CA264_18075 at 4204.313 kb on - strand, within CA264_18075 at 4204.314 kb on + strand, within CA264_18075 at 4204.341 kb on + strand, within CA264_18075 at 4204.357 kb on - strand, within CA264_18075 at 4204.394 kb on + strand, within CA264_18075 at 4204.394 kb on + strand, within CA264_18075 at 4204.395 kb on - strand, within CA264_18075 at 4204.499 kb on + strand, within CA264_18075 at 4204.499 kb on + strand, within CA264_18075 at 4204.499 kb on + strand, within CA264_18075 at 4204.500 kb on - strand, within CA264_18075 at 4204.528 kb on + strand, within CA264_18075 at 4204.529 kb on - strand, within CA264_18075 at 4204.534 kb on + strand, within CA264_18075 at 4204.535 kb on - strand, within CA264_18075 at 4204.614 kb on + strand, within CA264_18075 at 4204.614 kb on + strand, within CA264_18075 at 4204.615 kb on - strand, within CA264_18075 at 4204.692 kb on - strand, within CA264_18075 at 4204.821 kb on + strand, within CA264_18075 at 4204.829 kb on - strand, within CA264_18075 at 4204.944 kb on + strand, within CA264_18075 at 4204.945 kb on - strand, within CA264_18075 at 4204.956 kb on + strand, within CA264_18075 at 4204.960 kb on + strand, within CA264_18075 at 4204.961 kb on - strand, within CA264_18075 at 4204.976 kb on + strand, within CA264_18075 at 4204.976 kb on + strand, within CA264_18075 at 4204.979 kb on - strand, within CA264_18075 at 4205.139 kb on + strand at 4205.159 kb on + strand at 4205.165 kb on + strand at 4205.166 kb on - strand at 4205.166 kb on - strand at 4205.184 kb on - strand at 4205.202 kb on - strand at 4205.214 kb on - strand at 4205.216 kb on - strand at 4205.294 kb on - strand at 4205.307 kb on + strand at 4205.307 kb on + strand at 4205.314 kb on + strand at 4205.317 kb on + strand at 4205.318 kb on - strand at 4205.318 kb on - strand at 4205.318 kb on - strand at 4205.397 kb on + strand, within CA264_18080 at 4205.397 kb on + strand, within CA264_18080 at 4205.397 kb on + strand, within CA264_18080 at 4205.398 kb on - strand, within CA264_18080 at 4205.421 kb on - strand, within CA264_18080 at 4205.421 kb on - strand, within CA264_18080 at 4205.627 kb on + strand, within CA264_18080 at 4205.627 kb on + strand, within CA264_18080 at 4205.628 kb on - strand, within CA264_18080 at 4205.628 kb on - strand, within CA264_18080 at 4205.794 kb on + strand, within CA264_18080 at 4205.851 kb on + strand at 4205.855 kb on - strand at 4205.875 kb on - strand at 4205.982 kb on + strand at 4206.002 kb on - strand at 4206.002 kb on - strand at 4206.012 kb on + strand at 4206.025 kb on + strand at 4206.105 kb on + strand, within CA264_18085 at 4206.134 kb on - strand, within CA264_18085 at 4206.134 kb on - strand, within CA264_18085 at 4206.276 kb on - strand, within CA264_18085 at 4206.316 kb on + strand, within CA264_18085 at 4206.393 kb on - strand, within CA264_18085 at 4206.410 kb on - strand, within CA264_18085 at 4206.416 kb on - strand, within CA264_18085 at 4206.509 kb on - strand, within CA264_18085 at 4206.509 kb on - strand, within CA264_18085 at 4206.687 kb on + strand, within CA264_18085 at 4206.815 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml remove 4,204,312 + CA264_18075 0.20 +0.0 4,204,312 + CA264_18075 0.20 -1.4 4,204,312 + CA264_18075 0.20 -0.4 4,204,313 - CA264_18075 0.20 -0.0 4,204,314 + CA264_18075 0.20 -0.7 4,204,341 + CA264_18075 0.22 -0.4 4,204,357 - CA264_18075 0.24 -0.3 4,204,394 + CA264_18075 0.28 -0.9 4,204,394 + CA264_18075 0.28 +0.8 4,204,395 - CA264_18075 0.28 -1.3 4,204,499 + CA264_18075 0.38 -0.4 4,204,499 + CA264_18075 0.38 -1.3 4,204,499 + CA264_18075 0.38 +0.1 4,204,500 - CA264_18075 0.38 -0.2 4,204,528 + CA264_18075 0.41 +0.2 4,204,529 - CA264_18075 0.41 -0.5 4,204,534 + CA264_18075 0.42 -0.3 4,204,535 - CA264_18075 0.42 -0.0 4,204,614 + CA264_18075 0.50 -0.6 4,204,614 + CA264_18075 0.50 -1.2 4,204,615 - CA264_18075 0.50 -0.3 4,204,692 - CA264_18075 0.57 +0.9 4,204,821 + CA264_18075 0.70 +0.3 4,204,829 - CA264_18075 0.71 -1.0 4,204,944 + CA264_18075 0.82 -2.0 4,204,945 - CA264_18075 0.83 -0.7 4,204,956 + CA264_18075 0.84 -0.5 4,204,960 + CA264_18075 0.84 -0.2 4,204,961 - CA264_18075 0.84 -0.1 4,204,976 + CA264_18075 0.86 -0.8 4,204,976 + CA264_18075 0.86 -0.6 4,204,979 - CA264_18075 0.86 -0.7 4,205,139 + +0.5 4,205,159 + -0.5 4,205,165 + +0.3 4,205,166 - +0.4 4,205,166 - -0.6 4,205,184 - -0.3 4,205,202 - -0.6 4,205,214 - -0.7 4,205,216 - -0.0 4,205,294 - -0.3 4,205,307 + +0.2 4,205,307 + +0.0 4,205,314 + -0.7 4,205,317 + +0.6 4,205,318 - -0.5 4,205,318 - -0.3 4,205,318 - -0.8 4,205,397 + CA264_18080 0.22 -0.6 4,205,397 + CA264_18080 0.22 +1.3 4,205,397 + CA264_18080 0.22 +0.4 4,205,398 - CA264_18080 0.22 -0.2 4,205,421 - CA264_18080 0.26 +0.5 4,205,421 - CA264_18080 0.26 +0.6 4,205,627 + CA264_18080 0.61 -0.1 4,205,627 + CA264_18080 0.61 +0.8 4,205,628 - CA264_18080 0.61 +0.2 4,205,628 - CA264_18080 0.61 +0.2 4,205,794 + CA264_18080 0.89 +1.0 4,205,851 + +0.5 4,205,855 - +0.8 4,205,875 - -0.3 4,205,982 + +0.3 4,206,002 - -0.1 4,206,002 - -0.7 4,206,012 + +0.0 4,206,025 + -0.3 4,206,105 + CA264_18085 0.13 +0.6 4,206,134 - CA264_18085 0.16 +0.6 4,206,134 - CA264_18085 0.16 -0.2 4,206,276 - CA264_18085 0.34 +1.3 4,206,316 + CA264_18085 0.40 -0.5 4,206,393 - CA264_18085 0.49 -0.1 4,206,410 - CA264_18085 0.52 +0.6 4,206,416 - CA264_18085 0.52 -0.0 4,206,509 - CA264_18085 0.64 -0.4 4,206,509 - CA264_18085 0.64 +0.4 4,206,687 + CA264_18085 0.87 +1.5 4,206,815 + +0.3
Or see this region's nucleotide sequence