Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17830

Experiment: m.b. Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17825 and CA264_17830 are separated by 121 nucleotidesCA264_17830 and CA264_17835 are separated by 129 nucleotides CA264_17825: CA264_17825 - anhydro-N-acetylmuramic acid kinase, at 4,144,650 to 4,145,723 _17825 CA264_17830: CA264_17830 - transcriptional regulator, at 4,145,845 to 4,146,153 _17830 CA264_17835: CA264_17835 - glutamyl-tRNA reductase, at 4,146,283 to 4,147,566 _17835 Position (kb) 4145 4146 4147Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4145.886 kb on + strand, within CA264_17830at 4145.930 kb on + strand, within CA264_17830at 4145.983 kb on + strand, within CA264_17830at 4145.983 kb on + strand, within CA264_17830at 4145.983 kb on + strand, within CA264_17830at 4145.983 kb on + strand, within CA264_17830at 4145.994 kb on - strand, within CA264_17830at 4146.030 kb on + strand, within CA264_17830at 4146.081 kb on - strand, within CA264_17830at 4146.082 kb on + strand, within CA264_17830at 4146.083 kb on - strand, within CA264_17830at 4146.083 kb on - strand, within CA264_17830at 4146.086 kb on - strand, within CA264_17830at 4146.151 kb on + strandat 4146.168 kb on + strandat 4146.218 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
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4,145,886 + CA264_17830 0.13 -0.6
4,145,930 + CA264_17830 0.28 -0.5
4,145,983 + CA264_17830 0.45 +0.2
4,145,983 + CA264_17830 0.45 -0.8
4,145,983 + CA264_17830 0.45 +0.2
4,145,983 + CA264_17830 0.45 +2.2
4,145,994 - CA264_17830 0.48 -3.6
4,146,030 + CA264_17830 0.60 +0.4
4,146,081 - CA264_17830 0.76 -0.8
4,146,082 + CA264_17830 0.77 +0.8
4,146,083 - CA264_17830 0.77 -1.5
4,146,083 - CA264_17830 0.77 +1.2
4,146,086 - CA264_17830 0.78 -0.4
4,146,151 + -0.9
4,146,168 + +1.2
4,146,218 + -0.2

Or see this region's nucleotide sequence