Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17590

Experiment: m.b. Vancomycin 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_17585 and CA264_17590 are separated by 77 nucleotidesCA264_17590 and CA264_17595 are separated by 47 nucleotidesCA264_17595 and CA264_17600 are separated by 136 nucleotides CA264_17585: CA264_17585 - ribonuclease BN, at 4,097,213 to 4,098,238 _17585 CA264_17590: CA264_17590 - RidA family protein, at 4,098,316 to 4,098,696 _17590 CA264_17595: CA264_17595 - 3-hydroxyacyl-CoA dehydrogenase, at 4,098,744 to 4,099,421 _17595 CA264_17600: CA264_17600 - hypothetical protein, at 4,099,558 to 4,100,178 _17600 Position (kb) 4098 4099Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4097.316 kb on - strand, within CA264_17585at 4097.403 kb on + strand, within CA264_17585at 4097.403 kb on + strand, within CA264_17585at 4097.404 kb on - strand, within CA264_17585at 4097.404 kb on - strand, within CA264_17585at 4097.405 kb on + strand, within CA264_17585at 4097.405 kb on + strand, within CA264_17585at 4097.405 kb on + strand, within CA264_17585at 4097.406 kb on - strand, within CA264_17585at 4097.408 kb on + strand, within CA264_17585at 4097.409 kb on - strand, within CA264_17585at 4097.472 kb on + strand, within CA264_17585at 4097.586 kb on + strand, within CA264_17585at 4097.586 kb on + strand, within CA264_17585at 4097.586 kb on + strand, within CA264_17585at 4097.609 kb on + strand, within CA264_17585at 4097.816 kb on - strand, within CA264_17585at 4097.816 kb on - strand, within CA264_17585at 4097.819 kb on + strand, within CA264_17585at 4097.819 kb on + strand, within CA264_17585at 4097.820 kb on - strand, within CA264_17585at 4097.879 kb on - strand, within CA264_17585at 4098.041 kb on + strand, within CA264_17585at 4098.068 kb on + strand, within CA264_17585at 4098.317 kb on + strandat 4098.611 kb on + strand, within CA264_17590at 4098.611 kb on + strand, within CA264_17590at 4098.611 kb on + strand, within CA264_17590at 4098.611 kb on + strand, within CA264_17590at 4098.612 kb on - strand, within CA264_17590at 4098.612 kb on - strand, within CA264_17590at 4098.628 kb on + strand, within CA264_17590at 4098.688 kb on - strandat 4098.688 kb on - strandat 4098.688 kb on - strandat 4098.688 kb on - strandat 4098.688 kb on - strandat 4098.688 kb on - strandat 4098.710 kb on + strandat 4098.710 kb on + strandat 4098.711 kb on - strandat 4098.717 kb on + strandat 4098.723 kb on + strandat 4098.743 kb on + strandat 4098.743 kb on + strandat 4098.744 kb on - strandat 4098.751 kb on + strandat 4098.751 kb on + strandat 4098.751 kb on + strandat 4098.752 kb on - strandat 4098.752 kb on - strandat 4098.752 kb on - strandat 4098.825 kb on + strand, within CA264_17595at 4098.826 kb on - strand, within CA264_17595at 4098.826 kb on - strand, within CA264_17595at 4098.827 kb on + strand, within CA264_17595at 4099.185 kb on - strand, within CA264_17595at 4099.185 kb on - strand, within CA264_17595at 4099.185 kb on - strand, within CA264_17595at 4099.209 kb on - strand, within CA264_17595at 4099.233 kb on - strand, within CA264_17595at 4099.234 kb on + strand, within CA264_17595at 4099.323 kb on + strand, within CA264_17595at 4099.345 kb on - strand, within CA264_17595at 4099.369 kb on - strandat 4099.376 kb on - strandat 4099.420 kb on - strandat 4099.426 kb on - strandat 4099.428 kb on - strandat 4099.428 kb on - strandat 4099.428 kb on - strandat 4099.495 kb on - strandat 4099.502 kb on + strandat 4099.502 kb on + strandat 4099.502 kb on + strandat 4099.546 kb on - strandat 4099.547 kb on + strandat 4099.547 kb on + strandat 4099.547 kb on + strandat 4099.547 kb on + strandat 4099.548 kb on - strandat 4099.553 kb on - strandat 4099.582 kb on - strandat 4099.584 kb on - strandat 4099.596 kb on - strandat 4099.602 kb on + strandat 4099.603 kb on - strandat 4099.638 kb on + strand, within CA264_17600at 4099.639 kb on - strand, within CA264_17600at 4099.639 kb on - strand, within CA264_17600at 4099.639 kb on - strand, within CA264_17600at 4099.682 kb on - strand, within CA264_17600

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
remove
4,097,316 - CA264_17585 0.10 +0.0
4,097,403 + CA264_17585 0.19 -0.9
4,097,403 + CA264_17585 0.19 -0.3
4,097,404 - CA264_17585 0.19 +2.0
4,097,404 - CA264_17585 0.19 +0.0
4,097,405 + CA264_17585 0.19 -0.2
4,097,405 + CA264_17585 0.19 +0.2
4,097,405 + CA264_17585 0.19 -0.3
4,097,406 - CA264_17585 0.19 +2.8
4,097,408 + CA264_17585 0.19 +1.1
4,097,409 - CA264_17585 0.19 -0.7
4,097,472 + CA264_17585 0.25 -0.8
4,097,586 + CA264_17585 0.36 -0.3
4,097,586 + CA264_17585 0.36 -0.5
4,097,586 + CA264_17585 0.36 +0.6
4,097,609 + CA264_17585 0.39 -0.2
4,097,816 - CA264_17585 0.59 -0.4
4,097,816 - CA264_17585 0.59 +0.0
4,097,819 + CA264_17585 0.59 -0.0
4,097,819 + CA264_17585 0.59 -0.4
4,097,820 - CA264_17585 0.59 +0.3
4,097,879 - CA264_17585 0.65 -1.2
4,098,041 + CA264_17585 0.81 +1.2
4,098,068 + CA264_17585 0.83 -0.7
4,098,317 + -0.1
4,098,611 + CA264_17590 0.77 -0.4
4,098,611 + CA264_17590 0.77 -0.1
4,098,611 + CA264_17590 0.77 -0.4
4,098,611 + CA264_17590 0.77 -1.8
4,098,612 - CA264_17590 0.78 +0.2
4,098,612 - CA264_17590 0.78 +1.1
4,098,628 + CA264_17590 0.82 -0.3
4,098,688 - -0.2
4,098,688 - +0.9
4,098,688 - -0.1
4,098,688 - +0.1
4,098,688 - -0.0
4,098,688 - +0.0
4,098,710 + -0.2
4,098,710 + +0.4
4,098,711 - -0.3
4,098,717 + -0.3
4,098,723 + -0.1
4,098,743 + -0.1
4,098,743 + -0.1
4,098,744 - +1.1
4,098,751 + +1.1
4,098,751 + -0.1
4,098,751 + -0.8
4,098,752 - +0.1
4,098,752 - +0.5
4,098,752 - +0.4
4,098,825 + CA264_17595 0.12 -2.2
4,098,826 - CA264_17595 0.12 -0.5
4,098,826 - CA264_17595 0.12 -0.0
4,098,827 + CA264_17595 0.12 +0.6
4,099,185 - CA264_17595 0.65 -0.8
4,099,185 - CA264_17595 0.65 -0.5
4,099,185 - CA264_17595 0.65 +0.2
4,099,209 - CA264_17595 0.69 -0.1
4,099,233 - CA264_17595 0.72 +0.2
4,099,234 + CA264_17595 0.72 +0.6
4,099,323 + CA264_17595 0.85 +0.6
4,099,345 - CA264_17595 0.89 +1.0
4,099,369 - -0.3
4,099,376 - -0.2
4,099,420 - -0.2
4,099,426 - -1.4
4,099,428 - +0.3
4,099,428 - -1.0
4,099,428 - -0.4
4,099,495 - -0.6
4,099,502 + -1.2
4,099,502 + -2.0
4,099,502 + +0.4
4,099,546 - +0.0
4,099,547 + -0.4
4,099,547 + -0.7
4,099,547 + -1.1
4,099,547 + -0.6
4,099,548 - -1.1
4,099,553 - +0.1
4,099,582 - -1.1
4,099,584 - +0.4
4,099,596 - +0.3
4,099,602 + +0.9
4,099,603 - -0.8
4,099,638 + CA264_17600 0.13 +0.1
4,099,639 - CA264_17600 0.13 +0.3
4,099,639 - CA264_17600 0.13 -0.7
4,099,639 - CA264_17600 0.13 -0.7
4,099,682 - CA264_17600 0.20 +0.0

Or see this region's nucleotide sequence