Experiment: m.b. Vancomycin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15405 and CA264_15410 are separated by 153 nucleotides CA264_15410 and CA264_15415 are separated by 62 nucleotides CA264_15415 and CA264_15420 are separated by 120 nucleotides
CA264_15405: CA264_15405 - oxidoreductase, at 3,608,821 to 3,609,816
_15405
CA264_15410: CA264_15410 - hypothetical protein, at 3,609,970 to 3,610,605
_15410
CA264_15415: CA264_15415 - 1-aminocyclopropane-1-carboxylate deaminase, at 3,610,668 to 3,611,573
_15415
CA264_15420: CA264_15420 - hypothetical protein, at 3,611,694 to 3,614,132
_15420
Position (kb)
3610
3611
3612 Strain fitness (log2 ratio)
-1
0
1
2 at 3609.671 kb on - strand, within CA264_15405 at 3609.728 kb on + strand at 3609.728 kb on + strand at 3609.729 kb on - strand at 3609.814 kb on + strand at 3609.815 kb on - strand at 3609.904 kb on + strand at 3610.096 kb on + strand, within CA264_15410 at 3610.097 kb on - strand, within CA264_15410 at 3610.097 kb on - strand, within CA264_15410 at 3610.139 kb on + strand, within CA264_15410 at 3610.140 kb on - strand, within CA264_15410 at 3610.143 kb on + strand, within CA264_15410 at 3610.144 kb on - strand, within CA264_15410 at 3610.146 kb on - strand, within CA264_15410 at 3610.178 kb on + strand, within CA264_15410 at 3610.178 kb on + strand, within CA264_15410 at 3610.178 kb on + strand, within CA264_15410 at 3610.225 kb on - strand, within CA264_15410 at 3610.226 kb on + strand, within CA264_15410 at 3610.227 kb on - strand, within CA264_15410 at 3610.229 kb on + strand, within CA264_15410 at 3610.229 kb on + strand, within CA264_15410 at 3610.352 kb on - strand, within CA264_15410 at 3610.413 kb on + strand, within CA264_15410 at 3610.416 kb on - strand, within CA264_15410 at 3610.467 kb on + strand, within CA264_15410 at 3610.581 kb on + strand at 3610.581 kb on + strand at 3610.581 kb on + strand at 3610.582 kb on - strand at 3610.582 kb on - strand at 3610.588 kb on - strand at 3610.650 kb on - strand at 3610.650 kb on - strand at 3610.650 kb on - strand at 3610.789 kb on + strand, within CA264_15415 at 3610.789 kb on + strand, within CA264_15415 at 3610.808 kb on - strand, within CA264_15415 at 3610.876 kb on - strand, within CA264_15415 at 3610.962 kb on + strand, within CA264_15415 at 3611.168 kb on - strand, within CA264_15415 at 3611.341 kb on + strand, within CA264_15415 at 3611.342 kb on - strand, within CA264_15415 at 3611.342 kb on - strand, within CA264_15415 at 3611.409 kb on - strand, within CA264_15415 at 3611.409 kb on - strand, within CA264_15415 at 3611.443 kb on + strand, within CA264_15415 at 3611.613 kb on + strand at 3611.615 kb on + strand at 3611.620 kb on + strand at 3611.621 kb on - strand at 3611.743 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml remove 3,609,671 - CA264_15405 0.85 +1.7 3,609,728 + +1.1 3,609,728 + -0.4 3,609,729 - +0.1 3,609,814 + +0.1 3,609,815 - -0.3 3,609,904 + -0.6 3,610,096 + CA264_15410 0.20 -0.2 3,610,097 - CA264_15410 0.20 -1.6 3,610,097 - CA264_15410 0.20 -0.0 3,610,139 + CA264_15410 0.27 -0.0 3,610,140 - CA264_15410 0.27 -0.6 3,610,143 + CA264_15410 0.27 -0.2 3,610,144 - CA264_15410 0.27 +0.0 3,610,146 - CA264_15410 0.28 +0.2 3,610,178 + CA264_15410 0.33 -0.2 3,610,178 + CA264_15410 0.33 -0.5 3,610,178 + CA264_15410 0.33 -0.7 3,610,225 - CA264_15410 0.40 +0.1 3,610,226 + CA264_15410 0.40 +0.9 3,610,227 - CA264_15410 0.40 +1.9 3,610,229 + CA264_15410 0.41 -0.4 3,610,229 + CA264_15410 0.41 +0.3 3,610,352 - CA264_15410 0.60 +0.5 3,610,413 + CA264_15410 0.70 +0.2 3,610,416 - CA264_15410 0.70 -0.1 3,610,467 + CA264_15410 0.78 +0.4 3,610,581 + +0.3 3,610,581 + -0.2 3,610,581 + -0.3 3,610,582 - +0.2 3,610,582 - -0.0 3,610,588 - -1.0 3,610,650 - +1.1 3,610,650 - -0.2 3,610,650 - -0.7 3,610,789 + CA264_15415 0.13 +0.1 3,610,789 + CA264_15415 0.13 +0.7 3,610,808 - CA264_15415 0.15 -0.3 3,610,876 - CA264_15415 0.23 +0.8 3,610,962 + CA264_15415 0.32 -0.1 3,611,168 - CA264_15415 0.55 +0.4 3,611,341 + CA264_15415 0.74 -0.4 3,611,342 - CA264_15415 0.74 +1.1 3,611,342 - CA264_15415 0.74 -1.0 3,611,409 - CA264_15415 0.82 -0.6 3,611,409 - CA264_15415 0.82 -1.0 3,611,443 + CA264_15415 0.86 +0.0 3,611,613 + -0.4 3,611,615 + -0.3 3,611,620 + +0.3 3,611,621 - -0.6 3,611,743 + -0.9
Or see this region's nucleotide sequence