Experiment: m.b. Vancomycin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_11430 and CA264_11435 are separated by 17 nucleotides CA264_11435 and CA264_11440 are separated by 62 nucleotides
CA264_11430: CA264_11430 - endonuclease, at 2,648,989 to 2,649,936
_11430
CA264_11435: CA264_11435 - FAD-dependent oxidoreductase, at 2,649,954 to 2,651,351
_11435
CA264_11440: CA264_11440 - hypothetical protein, at 2,651,414 to 2,653,195
_11440
Position (kb)
2649
2650
2651
2652 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2648.959 kb on - strand at 2648.959 kb on - strand at 2648.960 kb on + strand at 2648.960 kb on + strand at 2648.961 kb on - strand at 2648.961 kb on - strand at 2648.961 kb on - strand at 2648.961 kb on - strand at 2648.976 kb on - strand at 2648.990 kb on + strand at 2649.112 kb on + strand, within CA264_11430 at 2649.202 kb on + strand, within CA264_11430 at 2649.212 kb on + strand, within CA264_11430 at 2649.212 kb on + strand, within CA264_11430 at 2649.212 kb on + strand, within CA264_11430 at 2649.213 kb on - strand, within CA264_11430 at 2649.213 kb on - strand, within CA264_11430 at 2649.213 kb on - strand, within CA264_11430 at 2649.249 kb on - strand, within CA264_11430 at 2649.299 kb on + strand, within CA264_11430 at 2649.341 kb on - strand, within CA264_11430 at 2649.431 kb on - strand, within CA264_11430 at 2649.483 kb on + strand, within CA264_11430 at 2649.506 kb on + strand, within CA264_11430 at 2649.575 kb on + strand, within CA264_11430 at 2649.681 kb on + strand, within CA264_11430 at 2649.685 kb on + strand, within CA264_11430 at 2649.685 kb on + strand, within CA264_11430 at 2649.685 kb on + strand, within CA264_11430 at 2649.685 kb on + strand, within CA264_11430 at 2649.685 kb on + strand, within CA264_11430 at 2649.686 kb on - strand, within CA264_11430 at 2649.688 kb on + strand, within CA264_11430 at 2649.688 kb on + strand, within CA264_11430 at 2649.688 kb on + strand, within CA264_11430 at 2649.688 kb on + strand, within CA264_11430 at 2649.689 kb on - strand, within CA264_11430 at 2649.712 kb on + strand, within CA264_11430 at 2649.713 kb on - strand, within CA264_11430 at 2649.718 kb on + strand, within CA264_11430 at 2649.718 kb on + strand, within CA264_11430 at 2649.719 kb on - strand, within CA264_11430 at 2649.790 kb on - strand, within CA264_11430 at 2649.795 kb on + strand, within CA264_11430 at 2649.796 kb on - strand, within CA264_11430 at 2649.796 kb on - strand, within CA264_11430 at 2649.800 kb on - strand, within CA264_11430 at 2649.800 kb on - strand, within CA264_11430 at 2649.805 kb on - strand, within CA264_11430 at 2649.838 kb on - strand, within CA264_11430 at 2649.872 kb on - strand at 2649.936 kb on + strand at 2650.036 kb on - strand at 2650.106 kb on + strand, within CA264_11435 at 2650.106 kb on + strand, within CA264_11435 at 2650.137 kb on - strand, within CA264_11435 at 2650.137 kb on - strand, within CA264_11435 at 2650.161 kb on - strand, within CA264_11435 at 2650.222 kb on + strand, within CA264_11435 at 2650.223 kb on - strand, within CA264_11435 at 2650.347 kb on + strand, within CA264_11435 at 2650.347 kb on + strand, within CA264_11435 at 2650.347 kb on + strand, within CA264_11435 at 2650.347 kb on + strand, within CA264_11435 at 2650.348 kb on - strand, within CA264_11435 at 2650.348 kb on - strand, within CA264_11435 at 2650.352 kb on - strand, within CA264_11435 at 2650.435 kb on + strand, within CA264_11435 at 2650.436 kb on - strand, within CA264_11435 at 2650.447 kb on + strand, within CA264_11435 at 2650.447 kb on + strand, within CA264_11435 at 2650.541 kb on + strand, within CA264_11435 at 2650.551 kb on + strand, within CA264_11435 at 2650.551 kb on + strand, within CA264_11435 at 2650.575 kb on - strand, within CA264_11435 at 2650.579 kb on - strand, within CA264_11435 at 2650.650 kb on + strand, within CA264_11435 at 2650.655 kb on + strand, within CA264_11435 at 2650.655 kb on + strand, within CA264_11435 at 2650.655 kb on + strand, within CA264_11435 at 2650.706 kb on - strand, within CA264_11435 at 2650.727 kb on + strand, within CA264_11435 at 2650.779 kb on - strand, within CA264_11435 at 2650.882 kb on - strand, within CA264_11435 at 2650.882 kb on - strand, within CA264_11435 at 2650.882 kb on - strand, within CA264_11435 at 2650.884 kb on - strand, within CA264_11435 at 2650.941 kb on - strand, within CA264_11435 at 2650.945 kb on - strand, within CA264_11435 at 2650.963 kb on + strand, within CA264_11435 at 2651.007 kb on + strand, within CA264_11435 at 2651.008 kb on - strand, within CA264_11435 at 2651.034 kb on + strand, within CA264_11435 at 2651.035 kb on - strand, within CA264_11435 at 2651.035 kb on - strand, within CA264_11435 at 2651.041 kb on - strand, within CA264_11435 at 2651.105 kb on + strand, within CA264_11435 at 2651.163 kb on + strand, within CA264_11435 at 2651.165 kb on + strand, within CA264_11435 at 2651.166 kb on - strand, within CA264_11435 at 2651.187 kb on - strand, within CA264_11435 at 2651.225 kb on + strand at 2651.226 kb on - strand at 2651.262 kb on - strand at 2651.366 kb on + strand at 2651.367 kb on - strand at 2651.370 kb on - strand at 2651.381 kb on + strand at 2651.381 kb on + strand at 2651.392 kb on - strand at 2651.459 kb on + strand at 2651.459 kb on + strand at 2651.460 kb on - strand at 2651.579 kb on + strand at 2651.583 kb on - strand at 2651.610 kb on - strand, within CA264_11440 at 2651.646 kb on - strand, within CA264_11440 at 2651.699 kb on + strand, within CA264_11440 at 2651.753 kb on + strand, within CA264_11440 at 2651.753 kb on + strand, within CA264_11440 at 2651.773 kb on + strand, within CA264_11440 at 2651.783 kb on + strand, within CA264_11440 at 2651.840 kb on + strand, within CA264_11440 at 2651.842 kb on + strand, within CA264_11440 at 2651.843 kb on - strand, within CA264_11440 at 2651.892 kb on - strand, within CA264_11440 at 2651.898 kb on - strand, within CA264_11440 at 2651.898 kb on - strand, within CA264_11440 at 2651.899 kb on + strand, within CA264_11440 at 2651.899 kb on + strand, within CA264_11440 at 2651.962 kb on + strand, within CA264_11440 at 2651.963 kb on - strand, within CA264_11440 at 2651.963 kb on - strand, within CA264_11440 at 2651.963 kb on - strand, within CA264_11440 at 2651.965 kb on + strand, within CA264_11440 at 2651.986 kb on + strand, within CA264_11440 at 2651.986 kb on + strand, within CA264_11440 at 2651.990 kb on + strand, within CA264_11440 at 2651.990 kb on + strand, within CA264_11440 at 2651.991 kb on - strand, within CA264_11440 at 2652.008 kb on + strand, within CA264_11440 at 2652.008 kb on + strand, within CA264_11440 at 2652.008 kb on + strand, within CA264_11440 at 2652.009 kb on - strand, within CA264_11440 at 2652.009 kb on - strand, within CA264_11440 at 2652.009 kb on - strand, within CA264_11440 at 2652.020 kb on - strand, within CA264_11440 at 2652.021 kb on + strand, within CA264_11440 at 2652.021 kb on + strand, within CA264_11440 at 2652.021 kb on + strand, within CA264_11440 at 2652.021 kb on + strand, within CA264_11440 at 2652.021 kb on + strand, within CA264_11440 at 2652.021 kb on + strand, within CA264_11440 at 2652.021 kb on + strand, within CA264_11440 at 2652.021 kb on + strand, within CA264_11440 at 2652.022 kb on - strand, within CA264_11440 at 2652.022 kb on - strand, within CA264_11440 at 2652.022 kb on - strand, within CA264_11440 at 2652.025 kb on + strand, within CA264_11440 at 2652.026 kb on - strand, within CA264_11440 at 2652.038 kb on + strand, within CA264_11440 at 2652.188 kb on - strand, within CA264_11440 at 2652.192 kb on - strand, within CA264_11440 at 2652.192 kb on - strand, within CA264_11440 at 2652.197 kb on - strand, within CA264_11440 at 2652.197 kb on - strand, within CA264_11440 at 2652.251 kb on + strand, within CA264_11440
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml remove 2,648,959 - +0.4 2,648,959 - -2.1 2,648,960 + -0.5 2,648,960 + -0.5 2,648,961 - -0.9 2,648,961 - -0.3 2,648,961 - -0.5 2,648,961 - -0.9 2,648,976 - -0.5 2,648,990 + +0.1 2,649,112 + CA264_11430 0.13 +0.1 2,649,202 + CA264_11430 0.22 +0.6 2,649,212 + CA264_11430 0.24 -0.6 2,649,212 + CA264_11430 0.24 +1.5 2,649,212 + CA264_11430 0.24 -0.8 2,649,213 - CA264_11430 0.24 -0.6 2,649,213 - CA264_11430 0.24 -1.5 2,649,213 - CA264_11430 0.24 +1.4 2,649,249 - CA264_11430 0.27 -1.4 2,649,299 + CA264_11430 0.33 -0.4 2,649,341 - CA264_11430 0.37 -1.0 2,649,431 - CA264_11430 0.47 -0.1 2,649,483 + CA264_11430 0.52 -0.5 2,649,506 + CA264_11430 0.55 +0.8 2,649,575 + CA264_11430 0.62 +0.8 2,649,681 + CA264_11430 0.73 -0.0 2,649,685 + CA264_11430 0.73 -0.9 2,649,685 + CA264_11430 0.73 +0.5 2,649,685 + CA264_11430 0.73 -0.1 2,649,685 + CA264_11430 0.73 -1.5 2,649,685 + CA264_11430 0.73 -0.2 2,649,686 - CA264_11430 0.74 -0.8 2,649,688 + CA264_11430 0.74 +0.5 2,649,688 + CA264_11430 0.74 -1.2 2,649,688 + CA264_11430 0.74 -0.7 2,649,688 + CA264_11430 0.74 -0.5 2,649,689 - CA264_11430 0.74 +0.2 2,649,712 + CA264_11430 0.76 -0.2 2,649,713 - CA264_11430 0.76 -1.5 2,649,718 + CA264_11430 0.77 -2.5 2,649,718 + CA264_11430 0.77 -0.1 2,649,719 - CA264_11430 0.77 +0.7 2,649,790 - CA264_11430 0.84 -1.6 2,649,795 + CA264_11430 0.85 -1.9 2,649,796 - CA264_11430 0.85 -0.7 2,649,796 - CA264_11430 0.85 -1.4 2,649,800 - CA264_11430 0.86 -1.3 2,649,800 - CA264_11430 0.86 -0.4 2,649,805 - CA264_11430 0.86 -0.2 2,649,838 - CA264_11430 0.90 -0.4 2,649,872 - -0.5 2,649,936 + -0.9 2,650,036 - +0.7 2,650,106 + CA264_11435 0.11 -0.8 2,650,106 + CA264_11435 0.11 +0.0 2,650,137 - CA264_11435 0.13 -0.4 2,650,137 - CA264_11435 0.13 +0.1 2,650,161 - CA264_11435 0.15 +0.2 2,650,222 + CA264_11435 0.19 -2.8 2,650,223 - CA264_11435 0.19 -0.7 2,650,347 + CA264_11435 0.28 -1.0 2,650,347 + CA264_11435 0.28 +0.1 2,650,347 + CA264_11435 0.28 -0.7 2,650,347 + CA264_11435 0.28 -0.8 2,650,348 - CA264_11435 0.28 +1.7 2,650,348 - CA264_11435 0.28 +0.3 2,650,352 - CA264_11435 0.28 -1.2 2,650,435 + CA264_11435 0.34 +0.6 2,650,436 - CA264_11435 0.34 -1.5 2,650,447 + CA264_11435 0.35 -1.1 2,650,447 + CA264_11435 0.35 -0.8 2,650,541 + CA264_11435 0.42 +1.5 2,650,551 + CA264_11435 0.43 -1.9 2,650,551 + CA264_11435 0.43 -0.7 2,650,575 - CA264_11435 0.44 +0.5 2,650,579 - CA264_11435 0.45 +1.3 2,650,650 + CA264_11435 0.50 +0.2 2,650,655 + CA264_11435 0.50 -0.2 2,650,655 + CA264_11435 0.50 -0.2 2,650,655 + CA264_11435 0.50 +0.2 2,650,706 - CA264_11435 0.54 +1.0 2,650,727 + CA264_11435 0.55 +1.4 2,650,779 - CA264_11435 0.59 -0.2 2,650,882 - CA264_11435 0.66 -0.6 2,650,882 - CA264_11435 0.66 -0.5 2,650,882 - CA264_11435 0.66 -1.5 2,650,884 - CA264_11435 0.67 +1.0 2,650,941 - CA264_11435 0.71 -1.4 2,650,945 - CA264_11435 0.71 +0.6 2,650,963 + CA264_11435 0.72 -1.0 2,651,007 + CA264_11435 0.75 -0.5 2,651,008 - CA264_11435 0.75 -2.8 2,651,034 + CA264_11435 0.77 +0.7 2,651,035 - CA264_11435 0.77 -0.3 2,651,035 - CA264_11435 0.77 -0.8 2,651,041 - CA264_11435 0.78 -1.8 2,651,105 + CA264_11435 0.82 -1.5 2,651,163 + CA264_11435 0.86 -0.3 2,651,165 + CA264_11435 0.87 -1.6 2,651,166 - CA264_11435 0.87 +0.6 2,651,187 - CA264_11435 0.88 -0.8 2,651,225 + -1.3 2,651,226 - -1.5 2,651,262 - -0.9 2,651,366 + +0.2 2,651,367 - -1.2 2,651,370 - -1.2 2,651,381 + -0.7 2,651,381 + -0.2 2,651,392 - -0.7 2,651,459 + -1.3 2,651,459 + -1.2 2,651,460 - -1.5 2,651,579 + -0.8 2,651,583 - -0.8 2,651,610 - CA264_11440 0.11 -1.0 2,651,646 - CA264_11440 0.13 -1.5 2,651,699 + CA264_11440 0.16 -0.8 2,651,753 + CA264_11440 0.19 +0.5 2,651,753 + CA264_11440 0.19 -0.0 2,651,773 + CA264_11440 0.20 -0.5 2,651,783 + CA264_11440 0.21 -0.0 2,651,840 + CA264_11440 0.24 -0.5 2,651,842 + CA264_11440 0.24 +0.7 2,651,843 - CA264_11440 0.24 -0.5 2,651,892 - CA264_11440 0.27 -0.0 2,651,898 - CA264_11440 0.27 -1.6 2,651,898 - CA264_11440 0.27 -2.0 2,651,899 + CA264_11440 0.27 +0.2 2,651,899 + CA264_11440 0.27 -0.5 2,651,962 + CA264_11440 0.31 -0.3 2,651,963 - CA264_11440 0.31 -0.3 2,651,963 - CA264_11440 0.31 -1.5 2,651,963 - CA264_11440 0.31 -0.4 2,651,965 + CA264_11440 0.31 -0.9 2,651,986 + CA264_11440 0.32 +0.2 2,651,986 + CA264_11440 0.32 -0.2 2,651,990 + CA264_11440 0.32 -0.3 2,651,990 + CA264_11440 0.32 +0.3 2,651,991 - CA264_11440 0.32 +0.4 2,652,008 + CA264_11440 0.33 -0.7 2,652,008 + CA264_11440 0.33 -0.9 2,652,008 + CA264_11440 0.33 +0.0 2,652,009 - CA264_11440 0.33 -0.0 2,652,009 - CA264_11440 0.33 -0.7 2,652,009 - CA264_11440 0.33 -1.1 2,652,020 - CA264_11440 0.34 -0.5 2,652,021 + CA264_11440 0.34 +0.7 2,652,021 + CA264_11440 0.34 -0.5 2,652,021 + CA264_11440 0.34 -0.2 2,652,021 + CA264_11440 0.34 +0.2 2,652,021 + CA264_11440 0.34 -0.8 2,652,021 + CA264_11440 0.34 -1.5 2,652,021 + CA264_11440 0.34 -0.5 2,652,021 + CA264_11440 0.34 +0.3 2,652,022 - CA264_11440 0.34 -0.9 2,652,022 - CA264_11440 0.34 -1.6 2,652,022 - CA264_11440 0.34 +0.7 2,652,025 + CA264_11440 0.34 +0.7 2,652,026 - CA264_11440 0.34 +0.8 2,652,038 + CA264_11440 0.35 -0.3 2,652,188 - CA264_11440 0.43 -1.1 2,652,192 - CA264_11440 0.44 +0.2 2,652,192 - CA264_11440 0.44 -0.5 2,652,197 - CA264_11440 0.44 -1.4 2,652,197 - CA264_11440 0.44 +0.7 2,652,251 + CA264_11440 0.47 +0.3
Or see this region's nucleotide sequence