Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10495

Experiment: m.b. Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10485 and CA264_10490 are separated by 286 nucleotidesCA264_10490 and CA264_10495 overlap by 4 nucleotidesCA264_10495 and CA264_10500 are separated by 98 nucleotides CA264_10485: CA264_10485 - lipoprotein-releasing system ATP-binding protein LolD, at 2,431,492 to 2,432,145 _10485 CA264_10490: CA264_10490 - MobA-like protein, at 2,432,432 to 2,433,016 _10490 CA264_10495: CA264_10495 - alanine dehydrogenase, at 2,433,013 to 2,434,203 _10495 CA264_10500: CA264_10500 - aldehyde oxidase, at 2,434,302 to 2,436,521 _10500 Position (kb) 2433 2434 2435Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2432.144 kb on - strandat 2432.156 kb on - strandat 2432.164 kb on - strandat 2432.171 kb on + strandat 2432.171 kb on + strandat 2432.177 kb on + strandat 2432.177 kb on + strandat 2432.177 kb on + strandat 2432.178 kb on - strandat 2432.178 kb on - strandat 2432.202 kb on + strandat 2432.223 kb on - strandat 2432.223 kb on - strandat 2432.236 kb on + strandat 2432.236 kb on + strandat 2432.237 kb on - strandat 2432.251 kb on - strandat 2432.256 kb on + strandat 2432.256 kb on + strandat 2432.256 kb on + strandat 2432.256 kb on + strandat 2432.256 kb on + strandat 2432.257 kb on - strandat 2432.266 kb on + strandat 2432.267 kb on - strandat 2432.269 kb on - strandat 2432.269 kb on - strandat 2432.312 kb on - strandat 2432.314 kb on - strandat 2432.374 kb on - strandat 2432.377 kb on + strandat 2432.377 kb on + strandat 2432.377 kb on + strandat 2432.378 kb on - strandat 2432.378 kb on - strandat 2432.378 kb on - strandat 2432.378 kb on - strandat 2432.378 kb on - strandat 2432.379 kb on + strandat 2432.379 kb on + strandat 2432.379 kb on + strandat 2432.379 kb on + strandat 2432.379 kb on + strandat 2432.379 kb on + strandat 2432.379 kb on + strandat 2432.379 kb on + strandat 2432.379 kb on + strandat 2432.379 kb on + strandat 2432.379 kb on + strandat 2432.380 kb on - strandat 2432.380 kb on - strandat 2432.380 kb on - strandat 2432.380 kb on - strandat 2432.380 kb on - strandat 2432.429 kb on - strandat 2432.434 kb on - strandat 2432.458 kb on + strandat 2432.477 kb on + strandat 2432.477 kb on + strandat 2432.478 kb on - strandat 2432.594 kb on - strand, within CA264_10490at 2432.695 kb on + strand, within CA264_10490at 2432.698 kb on - strand, within CA264_10490at 2432.757 kb on + strand, within CA264_10490at 2432.822 kb on + strand, within CA264_10490at 2432.841 kb on + strand, within CA264_10490at 2432.842 kb on - strand, within CA264_10490at 2432.916 kb on - strand, within CA264_10490at 2432.951 kb on + strand, within CA264_10490at 2432.951 kb on + strand, within CA264_10490at 2432.952 kb on - strand, within CA264_10490at 2433.016 kb on + strandat 2433.091 kb on + strandat 2433.218 kb on + strand, within CA264_10495at 2433.219 kb on - strand, within CA264_10495at 2433.317 kb on + strand, within CA264_10495at 2433.318 kb on - strand, within CA264_10495at 2433.362 kb on + strand, within CA264_10495at 2433.362 kb on + strand, within CA264_10495at 2433.363 kb on - strand, within CA264_10495at 2433.363 kb on - strand, within CA264_10495at 2433.368 kb on + strand, within CA264_10495at 2433.368 kb on + strand, within CA264_10495at 2433.368 kb on + strand, within CA264_10495at 2433.369 kb on - strand, within CA264_10495at 2433.369 kb on - strand, within CA264_10495at 2433.448 kb on + strand, within CA264_10495at 2433.449 kb on - strand, within CA264_10495at 2433.485 kb on + strand, within CA264_10495at 2433.523 kb on + strand, within CA264_10495at 2433.527 kb on - strand, within CA264_10495at 2433.528 kb on + strand, within CA264_10495at 2433.528 kb on + strand, within CA264_10495at 2433.528 kb on + strand, within CA264_10495at 2433.529 kb on - strand, within CA264_10495at 2433.529 kb on - strand, within CA264_10495at 2433.529 kb on - strand, within CA264_10495at 2433.529 kb on - strand, within CA264_10495at 2433.535 kb on + strand, within CA264_10495at 2433.535 kb on + strand, within CA264_10495at 2433.641 kb on + strand, within CA264_10495at 2433.641 kb on + strand, within CA264_10495at 2433.641 kb on + strand, within CA264_10495at 2433.642 kb on - strand, within CA264_10495at 2433.733 kb on + strand, within CA264_10495at 2433.734 kb on - strand, within CA264_10495at 2433.752 kb on - strand, within CA264_10495at 2433.865 kb on - strand, within CA264_10495at 2433.965 kb on + strand, within CA264_10495at 2433.965 kb on + strand, within CA264_10495at 2434.117 kb on + strandat 2434.173 kb on - strandat 2434.173 kb on - strandat 2434.173 kb on - strandat 2434.185 kb on + strandat 2434.192 kb on + strandat 2434.212 kb on + strandat 2434.213 kb on - strandat 2434.227 kb on - strandat 2434.227 kb on - strandat 2434.227 kb on - strandat 2434.229 kb on - strandat 2434.238 kb on + strandat 2434.238 kb on + strandat 2434.239 kb on - strandat 2434.272 kb on - strandat 2434.279 kb on + strandat 2434.293 kb on + strandat 2434.294 kb on - strandat 2434.294 kb on - strandat 2434.439 kb on + strandat 2434.440 kb on - strandat 2434.464 kb on + strandat 2434.491 kb on + strandat 2434.505 kb on - strandat 2434.505 kb on - strandat 2434.631 kb on + strand, within CA264_10500at 2434.674 kb on + strand, within CA264_10500at 2434.674 kb on + strand, within CA264_10500at 2434.766 kb on - strand, within CA264_10500at 2434.824 kb on + strand, within CA264_10500at 2434.825 kb on - strand, within CA264_10500at 2434.852 kb on + strand, within CA264_10500at 2434.852 kb on + strand, within CA264_10500at 2434.852 kb on + strand, within CA264_10500at 2434.875 kb on + strand, within CA264_10500at 2434.876 kb on - strand, within CA264_10500

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
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2,432,144 - -1.6
2,432,156 - +0.6
2,432,164 - -2.1
2,432,171 + -0.2
2,432,171 + +0.1
2,432,177 + -0.4
2,432,177 + +0.3
2,432,177 + +0.2
2,432,178 - +0.1
2,432,178 - -1.3
2,432,202 + +1.2
2,432,223 - -1.7
2,432,223 - -1.7
2,432,236 + -0.2
2,432,236 + -0.8
2,432,237 - -0.9
2,432,251 - -0.4
2,432,256 + -0.2
2,432,256 + -0.3
2,432,256 + +0.0
2,432,256 + +0.6
2,432,256 + +0.2
2,432,257 - -1.8
2,432,266 + -0.9
2,432,267 - -1.1
2,432,269 - -0.6
2,432,269 - +0.3
2,432,312 - -1.0
2,432,314 - -0.8
2,432,374 - +0.4
2,432,377 + +0.1
2,432,377 + -0.6
2,432,377 + +0.7
2,432,378 - -1.0
2,432,378 - +0.1
2,432,378 - -0.9
2,432,378 - -1.7
2,432,378 - -0.4
2,432,379 + +0.3
2,432,379 + +0.8
2,432,379 + +1.9
2,432,379 + -0.1
2,432,379 + -0.1
2,432,379 + +0.0
2,432,379 + -0.1
2,432,379 + -0.3
2,432,379 + -0.1
2,432,379 + -0.3
2,432,379 + -0.3
2,432,380 - -0.6
2,432,380 - -0.5
2,432,380 - +1.2
2,432,380 - +0.3
2,432,380 - -0.2
2,432,429 - -0.3
2,432,434 - +0.9
2,432,458 + -0.7
2,432,477 + -0.2
2,432,477 + -0.7
2,432,478 - +0.5
2,432,594 - CA264_10490 0.28 +0.1
2,432,695 + CA264_10490 0.45 +0.0
2,432,698 - CA264_10490 0.45 +0.6
2,432,757 + CA264_10490 0.56 +0.0
2,432,822 + CA264_10490 0.67 +0.5
2,432,841 + CA264_10490 0.70 +0.6
2,432,842 - CA264_10490 0.70 +0.0
2,432,916 - CA264_10490 0.83 -0.3
2,432,951 + CA264_10490 0.89 -1.0
2,432,951 + CA264_10490 0.89 +0.6
2,432,952 - CA264_10490 0.89 -0.6
2,433,016 + +0.6
2,433,091 + +0.6
2,433,218 + CA264_10495 0.17 +0.2
2,433,219 - CA264_10495 0.17 +0.6
2,433,317 + CA264_10495 0.26 -0.9
2,433,318 - CA264_10495 0.26 -0.7
2,433,362 + CA264_10495 0.29 +0.5
2,433,362 + CA264_10495 0.29 +3.2
2,433,363 - CA264_10495 0.29 -0.2
2,433,363 - CA264_10495 0.29 +0.9
2,433,368 + CA264_10495 0.30 -0.8
2,433,368 + CA264_10495 0.30 -0.7
2,433,368 + CA264_10495 0.30 +0.0
2,433,369 - CA264_10495 0.30 -1.0
2,433,369 - CA264_10495 0.30 +0.0
2,433,448 + CA264_10495 0.37 +1.0
2,433,449 - CA264_10495 0.37 +0.6
2,433,485 + CA264_10495 0.40 -0.5
2,433,523 + CA264_10495 0.43 +0.9
2,433,527 - CA264_10495 0.43 -1.0
2,433,528 + CA264_10495 0.43 -0.6
2,433,528 + CA264_10495 0.43 -0.2
2,433,528 + CA264_10495 0.43 +0.0
2,433,529 - CA264_10495 0.43 -0.8
2,433,529 - CA264_10495 0.43 +0.2
2,433,529 - CA264_10495 0.43 -0.4
2,433,529 - CA264_10495 0.43 -1.4
2,433,535 + CA264_10495 0.44 -0.5
2,433,535 + CA264_10495 0.44 -0.1
2,433,641 + CA264_10495 0.53 -0.1
2,433,641 + CA264_10495 0.53 +0.1
2,433,641 + CA264_10495 0.53 -0.2
2,433,642 - CA264_10495 0.53 -1.2
2,433,733 + CA264_10495 0.60 -0.1
2,433,734 - CA264_10495 0.61 +0.2
2,433,752 - CA264_10495 0.62 +0.1
2,433,865 - CA264_10495 0.72 -0.5
2,433,965 + CA264_10495 0.80 +0.4
2,433,965 + CA264_10495 0.80 -0.6
2,434,117 + -0.7
2,434,173 - -0.5
2,434,173 - +0.2
2,434,173 - +0.2
2,434,185 + -0.2
2,434,192 + -2.3
2,434,212 + -0.4
2,434,213 - +1.0
2,434,227 - -0.5
2,434,227 - -0.2
2,434,227 - -0.9
2,434,229 - +0.3
2,434,238 + +0.2
2,434,238 + -0.7
2,434,239 - +0.7
2,434,272 - -0.3
2,434,279 + -0.2
2,434,293 + +0.0
2,434,294 - -0.2
2,434,294 - +0.2
2,434,439 + -0.5
2,434,440 - +1.5
2,434,464 + -0.4
2,434,491 + -0.3
2,434,505 - -1.2
2,434,505 - -0.4
2,434,631 + CA264_10500 0.15 -0.2
2,434,674 + CA264_10500 0.17 -0.8
2,434,674 + CA264_10500 0.17 -0.7
2,434,766 - CA264_10500 0.21 +0.6
2,434,824 + CA264_10500 0.24 +0.9
2,434,825 - CA264_10500 0.24 +0.2
2,434,852 + CA264_10500 0.25 -0.7
2,434,852 + CA264_10500 0.25 +0.1
2,434,852 + CA264_10500 0.25 -0.1
2,434,875 + CA264_10500 0.26 +0.2
2,434,876 - CA264_10500 0.26 -0.1

Or see this region's nucleotide sequence