Experiment: m.b. Vancomycin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_10055 and CA264_10060 are separated by 35 nucleotides CA264_10060 and CA264_10065 overlap by 32 nucleotides CA264_10065 and CA264_10070 are separated by 402 nucleotides
CA264_10055: CA264_10055 - hypothetical protein, at 2,333,408 to 2,334,052
_10055
CA264_10060: CA264_10060 - two-component sensor histidine kinase, at 2,334,088 to 2,334,921
_10060
CA264_10065: CA264_10065 - DNA-binding response regulator, at 2,334,890 to 2,335,522
_10065
CA264_10070: CA264_10070 - hypothetical protein, at 2,335,925 to 2,336,308
_10070
Position (kb)
2334
2335
2336 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2333.890 kb on + strand, within CA264_10055 at 2333.918 kb on - strand, within CA264_10055 at 2333.918 kb on - strand, within CA264_10055 at 2333.956 kb on - strand, within CA264_10055 at 2333.960 kb on + strand, within CA264_10055 at 2333.961 kb on - strand, within CA264_10055 at 2333.995 kb on + strand at 2334.050 kb on + strand at 2334.168 kb on + strand at 2334.168 kb on + strand at 2334.327 kb on + strand, within CA264_10060 at 2334.351 kb on - strand, within CA264_10060 at 2334.355 kb on - strand, within CA264_10060 at 2334.531 kb on - strand, within CA264_10060 at 2334.569 kb on + strand, within CA264_10060 at 2334.569 kb on + strand, within CA264_10060 at 2334.570 kb on - strand, within CA264_10060 at 2334.670 kb on + strand, within CA264_10060 at 2334.860 kb on + strand at 2334.860 kb on + strand at 2334.861 kb on - strand at 2334.869 kb on - strand at 2334.883 kb on - strand at 2334.883 kb on - strand at 2334.889 kb on + strand at 2334.890 kb on - strand at 2334.975 kb on - strand, within CA264_10065 at 2334.976 kb on + strand, within CA264_10065 at 2334.976 kb on + strand, within CA264_10065 at 2334.977 kb on - strand, within CA264_10065 at 2334.977 kb on - strand, within CA264_10065 at 2335.012 kb on + strand, within CA264_10065 at 2335.123 kb on + strand, within CA264_10065 at 2335.124 kb on - strand, within CA264_10065 at 2335.124 kb on - strand, within CA264_10065 at 2335.268 kb on + strand, within CA264_10065 at 2335.269 kb on - strand, within CA264_10065 at 2335.269 kb on - strand, within CA264_10065 at 2335.269 kb on - strand, within CA264_10065 at 2335.487 kb on + strand at 2335.488 kb on - strand at 2335.531 kb on + strand at 2335.600 kb on - strand at 2335.628 kb on + strand at 2335.628 kb on + strand at 2335.629 kb on - strand at 2335.641 kb on + strand at 2335.669 kb on - strand at 2335.721 kb on + strand at 2335.721 kb on + strand at 2335.731 kb on - strand at 2335.731 kb on - strand at 2335.733 kb on - strand at 2335.739 kb on + strand at 2335.739 kb on + strand at 2335.739 kb on + strand at 2335.740 kb on - strand at 2335.740 kb on - strand at 2335.749 kb on + strand at 2335.749 kb on + strand at 2335.749 kb on + strand at 2335.750 kb on - strand at 2335.853 kb on + strand at 2335.854 kb on - strand at 2335.854 kb on - strand at 2335.860 kb on - strand at 2335.860 kb on - strand at 2335.880 kb on - strand at 2335.880 kb on - strand at 2335.880 kb on - strand at 2335.927 kb on - strand at 2335.927 kb on - strand at 2335.936 kb on + strand at 2335.937 kb on - strand at 2336.057 kb on + strand, within CA264_10070 at 2336.093 kb on + strand, within CA264_10070 at 2336.094 kb on - strand, within CA264_10070 at 2336.094 kb on - strand, within CA264_10070 at 2336.094 kb on - strand, within CA264_10070 at 2336.094 kb on - strand, within CA264_10070 at 2336.122 kb on + strand, within CA264_10070 at 2336.123 kb on - strand, within CA264_10070 at 2336.132 kb on - strand, within CA264_10070 at 2336.132 kb on - strand, within CA264_10070 at 2336.321 kb on + strand at 2336.321 kb on + strand at 2336.339 kb on + strand at 2336.349 kb on + strand at 2336.350 kb on - strand at 2336.353 kb on - strand at 2336.353 kb on - strand at 2336.353 kb on - strand at 2336.358 kb on + strand at 2336.358 kb on + strand at 2336.359 kb on - strand at 2336.359 kb on - strand at 2336.359 kb on - strand at 2336.359 kb on - strand at 2336.359 kb on - strand at 2336.362 kb on + strand at 2336.362 kb on + strand at 2336.380 kb on - strand at 2336.380 kb on - strand at 2336.389 kb on - strand at 2336.432 kb on + strand at 2336.432 kb on + strand at 2336.433 kb on - strand at 2336.445 kb on + strand at 2336.457 kb on + strand at 2336.471 kb on + strand at 2336.471 kb on + strand at 2336.471 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml remove 2,333,890 + CA264_10055 0.75 +0.5 2,333,918 - CA264_10055 0.79 +0.3 2,333,918 - CA264_10055 0.79 -0.1 2,333,956 - CA264_10055 0.85 -1.8 2,333,960 + CA264_10055 0.86 +0.3 2,333,961 - CA264_10055 0.86 -0.1 2,333,995 + -0.3 2,334,050 + -0.1 2,334,168 + -0.4 2,334,168 + +0.6 2,334,327 + CA264_10060 0.29 -2.2 2,334,351 - CA264_10060 0.32 -0.5 2,334,355 - CA264_10060 0.32 -0.2 2,334,531 - CA264_10060 0.53 -1.7 2,334,569 + CA264_10060 0.58 -0.9 2,334,569 + CA264_10060 0.58 +0.1 2,334,570 - CA264_10060 0.58 -0.0 2,334,670 + CA264_10060 0.70 -0.0 2,334,860 + -0.1 2,334,860 + -0.4 2,334,861 - -0.0 2,334,869 - -0.8 2,334,883 - -1.2 2,334,883 - +0.1 2,334,889 + -0.6 2,334,890 - -0.6 2,334,975 - CA264_10065 0.13 -0.0 2,334,976 + CA264_10065 0.14 -1.4 2,334,976 + CA264_10065 0.14 +0.6 2,334,977 - CA264_10065 0.14 +0.0 2,334,977 - CA264_10065 0.14 +1.2 2,335,012 + CA264_10065 0.19 -0.5 2,335,123 + CA264_10065 0.37 -0.7 2,335,124 - CA264_10065 0.37 -0.2 2,335,124 - CA264_10065 0.37 +0.0 2,335,268 + CA264_10065 0.60 -0.0 2,335,269 - CA264_10065 0.60 +1.2 2,335,269 - CA264_10065 0.60 -0.4 2,335,269 - CA264_10065 0.60 -0.3 2,335,487 + -0.6 2,335,488 - -0.4 2,335,531 + -1.0 2,335,600 - +1.5 2,335,628 + -0.3 2,335,628 + +0.6 2,335,629 - -0.6 2,335,641 + +1.9 2,335,669 - -0.7 2,335,721 + +0.4 2,335,721 + -0.3 2,335,731 - -0.4 2,335,731 - +0.9 2,335,733 - +0.2 2,335,739 + +0.1 2,335,739 + +1.1 2,335,739 + +0.5 2,335,740 - +0.6 2,335,740 - +1.7 2,335,749 + -0.1 2,335,749 + -0.3 2,335,749 + -0.4 2,335,750 - -0.7 2,335,853 + -0.4 2,335,854 - +1.2 2,335,854 - -0.3 2,335,860 - -0.0 2,335,860 - -0.4 2,335,880 - +0.5 2,335,880 - -0.4 2,335,880 - -0.1 2,335,927 - -0.1 2,335,927 - -0.0 2,335,936 + -1.0 2,335,937 - +1.3 2,336,057 + CA264_10070 0.34 -0.1 2,336,093 + CA264_10070 0.44 -0.5 2,336,094 - CA264_10070 0.44 -0.1 2,336,094 - CA264_10070 0.44 +0.2 2,336,094 - CA264_10070 0.44 -1.0 2,336,094 - CA264_10070 0.44 +0.7 2,336,122 + CA264_10070 0.51 -0.2 2,336,123 - CA264_10070 0.52 +0.1 2,336,132 - CA264_10070 0.54 +1.3 2,336,132 - CA264_10070 0.54 +0.3 2,336,321 + +0.6 2,336,321 + -0.4 2,336,339 + -0.1 2,336,349 + +0.2 2,336,350 - +0.9 2,336,353 - -0.4 2,336,353 - +0.3 2,336,353 - +0.2 2,336,358 + -0.7 2,336,358 + +0.5 2,336,359 - -2.3 2,336,359 - +2.3 2,336,359 - +1.3 2,336,359 - +0.3 2,336,359 - -0.2 2,336,362 + +0.6 2,336,362 + +0.4 2,336,380 - -0.0 2,336,380 - -0.4 2,336,389 - +0.0 2,336,432 + +0.1 2,336,432 + -1.6 2,336,433 - -1.0 2,336,445 + -0.2 2,336,457 + +0.0 2,336,471 + +1.7 2,336,471 + +0.4 2,336,471 + +1.9
Or see this region's nucleotide sequence