Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09405

Experiment: m.b. Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09395 and CA264_09400 are separated by 71 nucleotidesCA264_09400 and CA264_09405 are separated by 88 nucleotidesCA264_09405 and CA264_09410 are separated by 280 nucleotides CA264_09395: CA264_09395 - hypothetical protein, at 2,196,749 to 2,197,372 _09395 CA264_09400: CA264_09400 - hypothetical protein, at 2,197,444 to 2,197,671 _09400 CA264_09405: CA264_09405 - hypothetical protein, at 2,197,760 to 2,197,993 _09405 CA264_09410: CA264_09410 - recombinase RecQ, at 2,198,274 to 2,200,187 _09410 Position (kb) 2197 2198Strain fitness (log2 ratio) -1 0 1at 2196.825 kb on + strand, within CA264_09395at 2196.826 kb on - strand, within CA264_09395at 2196.946 kb on - strand, within CA264_09395at 2197.036 kb on + strand, within CA264_09395at 2197.056 kb on + strand, within CA264_09395at 2197.127 kb on + strand, within CA264_09395at 2197.129 kb on + strand, within CA264_09395at 2197.129 kb on + strand, within CA264_09395at 2197.129 kb on + strand, within CA264_09395at 2197.130 kb on - strand, within CA264_09395at 2197.213 kb on + strand, within CA264_09395at 2197.337 kb on - strandat 2197.367 kb on + strandat 2197.367 kb on + strandat 2197.372 kb on + strandat 2197.372 kb on + strandat 2197.373 kb on - strandat 2197.373 kb on - strandat 2197.444 kb on - strandat 2197.512 kb on - strand, within CA264_09400at 2197.519 kb on + strand, within CA264_09400at 2197.519 kb on + strand, within CA264_09400at 2197.520 kb on - strand, within CA264_09400at 2197.520 kb on - strand, within CA264_09400at 2197.575 kb on + strand, within CA264_09400at 2197.575 kb on + strand, within CA264_09400at 2197.576 kb on - strand, within CA264_09400at 2197.642 kb on + strand, within CA264_09400at 2197.734 kb on + strandat 2197.734 kb on + strandat 2197.738 kb on + strandat 2197.739 kb on - strandat 2197.745 kb on - strandat 2197.755 kb on + strandat 2197.755 kb on + strandat 2197.777 kb on - strandat 2197.842 kb on + strand, within CA264_09405at 2197.842 kb on + strand, within CA264_09405at 2197.842 kb on + strand, within CA264_09405at 2197.842 kb on + strand, within CA264_09405at 2197.897 kb on + strand, within CA264_09405at 2197.912 kb on + strand, within CA264_09405at 2197.913 kb on - strand, within CA264_09405at 2197.914 kb on + strand, within CA264_09405at 2197.914 kb on + strand, within CA264_09405at 2197.947 kb on + strand, within CA264_09405at 2197.948 kb on - strand, within CA264_09405at 2197.991 kb on + strandat 2197.991 kb on + strandat 2198.018 kb on - strandat 2198.019 kb on + strandat 2198.020 kb on - strandat 2198.095 kb on + strandat 2198.096 kb on - strandat 2198.112 kb on + strandat 2198.272 kb on + strandat 2198.312 kb on + strandat 2198.312 kb on + strandat 2198.313 kb on - strandat 2198.404 kb on + strandat 2198.404 kb on + strandat 2198.404 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
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2,196,825 + CA264_09395 0.12 +1.0
2,196,826 - CA264_09395 0.12 +0.4
2,196,946 - CA264_09395 0.32 +0.8
2,197,036 + CA264_09395 0.46 +1.2
2,197,056 + CA264_09395 0.49 -0.5
2,197,127 + CA264_09395 0.61 +0.2
2,197,129 + CA264_09395 0.61 -0.3
2,197,129 + CA264_09395 0.61 +1.5
2,197,129 + CA264_09395 0.61 +0.2
2,197,130 - CA264_09395 0.61 -0.4
2,197,213 + CA264_09395 0.74 -0.2
2,197,337 - +0.2
2,197,367 + -0.1
2,197,367 + +0.2
2,197,372 + +0.4
2,197,372 + -0.9
2,197,373 - -0.7
2,197,373 - -0.0
2,197,444 - +0.5
2,197,512 - CA264_09400 0.30 +0.7
2,197,519 + CA264_09400 0.33 -0.9
2,197,519 + CA264_09400 0.33 +0.4
2,197,520 - CA264_09400 0.33 -0.1
2,197,520 - CA264_09400 0.33 -0.0
2,197,575 + CA264_09400 0.57 -0.3
2,197,575 + CA264_09400 0.57 -0.9
2,197,576 - CA264_09400 0.58 -0.3
2,197,642 + CA264_09400 0.87 -0.3
2,197,734 + -0.2
2,197,734 + -0.2
2,197,738 + +0.8
2,197,739 - -0.6
2,197,745 - -0.0
2,197,755 + -0.3
2,197,755 + +0.5
2,197,777 - -0.4
2,197,842 + CA264_09405 0.35 -0.3
2,197,842 + CA264_09405 0.35 -0.5
2,197,842 + CA264_09405 0.35 -0.8
2,197,842 + CA264_09405 0.35 -0.5
2,197,897 + CA264_09405 0.59 +1.0
2,197,912 + CA264_09405 0.65 -0.2
2,197,913 - CA264_09405 0.65 -0.2
2,197,914 + CA264_09405 0.66 -1.4
2,197,914 + CA264_09405 0.66 -0.8
2,197,947 + CA264_09405 0.80 -0.4
2,197,948 - CA264_09405 0.80 +0.1
2,197,991 + +0.0
2,197,991 + -0.2
2,198,018 - -1.2
2,198,019 + -0.5
2,198,020 - +0.5
2,198,095 + +0.7
2,198,096 - +0.6
2,198,112 + +0.1
2,198,272 + -0.2
2,198,312 + +0.1
2,198,312 + -0.8
2,198,313 - -0.4
2,198,404 + -0.5
2,198,404 + -0.3
2,198,404 + +1.2

Or see this region's nucleotide sequence