Experiment: m.b. Vancomycin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09280 and CA264_09285 are separated by 54 nucleotides CA264_09285 and CA264_09290 are separated by 15 nucleotides
CA264_09280: CA264_09280 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 2,171,614 to 2,172,561
_09280
CA264_09285: CA264_09285 - anti-anti-sigma factor, at 2,172,616 to 2,172,993
_09285
CA264_09290: CA264_09290 - ribonuclease Z, at 2,173,009 to 2,173,926
_09290
Position (kb)
2172
2173 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2171.771 kb on - strand, within CA264_09280 at 2171.784 kb on - strand, within CA264_09280 at 2171.843 kb on + strand, within CA264_09280 at 2171.895 kb on + strand, within CA264_09280 at 2171.947 kb on + strand, within CA264_09280 at 2171.948 kb on - strand, within CA264_09280 at 2172.104 kb on + strand, within CA264_09280 at 2172.104 kb on + strand, within CA264_09280 at 2172.104 kb on + strand, within CA264_09280 at 2172.105 kb on - strand, within CA264_09280 at 2172.208 kb on + strand, within CA264_09280 at 2172.225 kb on + strand, within CA264_09280 at 2172.284 kb on - strand, within CA264_09280 at 2172.446 kb on - strand, within CA264_09280 at 2172.450 kb on - strand, within CA264_09280 at 2172.450 kb on - strand, within CA264_09280 at 2172.457 kb on + strand, within CA264_09280 at 2172.458 kb on - strand, within CA264_09280 at 2172.498 kb on + strand at 2172.499 kb on - strand at 2172.499 kb on - strand at 2172.584 kb on - strand at 2172.596 kb on - strand at 2172.610 kb on + strand at 2172.611 kb on - strand at 2172.629 kb on + strand at 2172.633 kb on + strand at 2172.662 kb on + strand, within CA264_09285 at 2172.681 kb on + strand, within CA264_09285 at 2172.772 kb on + strand, within CA264_09285 at 2172.791 kb on + strand, within CA264_09285 at 2172.792 kb on - strand, within CA264_09285 at 2172.799 kb on - strand, within CA264_09285 at 2172.981 kb on + strand at 2172.982 kb on - strand at 2172.992 kb on - strand at 2173.086 kb on - strand at 2173.103 kb on - strand, within CA264_09290 at 2173.157 kb on + strand, within CA264_09290 at 2173.210 kb on + strand, within CA264_09290 at 2173.321 kb on + strand, within CA264_09290 at 2173.388 kb on + strand, within CA264_09290 at 2173.388 kb on + strand, within CA264_09290 at 2173.389 kb on - strand, within CA264_09290 at 2173.412 kb on + strand, within CA264_09290 at 2173.627 kb on + strand, within CA264_09290 at 2173.627 kb on + strand, within CA264_09290 at 2173.628 kb on - strand, within CA264_09290 at 2173.665 kb on - strand, within CA264_09290 at 2173.665 kb on - strand, within CA264_09290 at 2173.673 kb on - strand, within CA264_09290 at 2173.696 kb on + strand, within CA264_09290 at 2173.742 kb on - strand, within CA264_09290 at 2173.743 kb on + strand, within CA264_09290 at 2173.744 kb on - strand, within CA264_09290 at 2173.744 kb on - strand, within CA264_09290 at 2173.755 kb on + strand, within CA264_09290 at 2173.890 kb on - strand at 2173.906 kb on - strand at 2173.924 kb on + strand at 2173.946 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml remove 2,171,771 - CA264_09280 0.17 +0.4 2,171,784 - CA264_09280 0.18 +0.2 2,171,843 + CA264_09280 0.24 -1.4 2,171,895 + CA264_09280 0.30 +0.6 2,171,947 + CA264_09280 0.35 -0.1 2,171,948 - CA264_09280 0.35 -0.5 2,172,104 + CA264_09280 0.52 -0.1 2,172,104 + CA264_09280 0.52 -0.3 2,172,104 + CA264_09280 0.52 -0.1 2,172,105 - CA264_09280 0.52 +0.0 2,172,208 + CA264_09280 0.63 -0.7 2,172,225 + CA264_09280 0.64 -0.7 2,172,284 - CA264_09280 0.71 -0.8 2,172,446 - CA264_09280 0.88 +3.4 2,172,450 - CA264_09280 0.88 +1.7 2,172,450 - CA264_09280 0.88 +0.7 2,172,457 + CA264_09280 0.89 +1.1 2,172,458 - CA264_09280 0.89 -1.6 2,172,498 + +0.5 2,172,499 - +1.0 2,172,499 - +0.2 2,172,584 - -0.5 2,172,596 - -0.9 2,172,610 + +1.5 2,172,611 - -0.2 2,172,629 + +0.1 2,172,633 + +1.4 2,172,662 + CA264_09285 0.12 +0.1 2,172,681 + CA264_09285 0.17 +0.2 2,172,772 + CA264_09285 0.41 +1.3 2,172,791 + CA264_09285 0.46 +0.3 2,172,792 - CA264_09285 0.47 +0.7 2,172,799 - CA264_09285 0.48 +0.2 2,172,981 + -1.3 2,172,982 - +0.4 2,172,992 - -1.0 2,173,086 - -0.6 2,173,103 - CA264_09290 0.10 -0.0 2,173,157 + CA264_09290 0.16 +0.2 2,173,210 + CA264_09290 0.22 +0.3 2,173,321 + CA264_09290 0.34 +0.6 2,173,388 + CA264_09290 0.41 -0.2 2,173,388 + CA264_09290 0.41 +0.0 2,173,389 - CA264_09290 0.41 +0.4 2,173,412 + CA264_09290 0.44 +0.9 2,173,627 + CA264_09290 0.67 -0.2 2,173,627 + CA264_09290 0.67 +0.3 2,173,628 - CA264_09290 0.67 -0.9 2,173,665 - CA264_09290 0.71 -0.1 2,173,665 - CA264_09290 0.71 -1.4 2,173,673 - CA264_09290 0.72 -0.0 2,173,696 + CA264_09290 0.75 +0.9 2,173,742 - CA264_09290 0.80 -0.5 2,173,743 + CA264_09290 0.80 -0.4 2,173,744 - CA264_09290 0.80 -0.5 2,173,744 - CA264_09290 0.80 -0.1 2,173,755 + CA264_09290 0.81 +1.4 2,173,890 - -0.4 2,173,906 - -0.4 2,173,924 + +0.4 2,173,946 - +1.1
Or see this region's nucleotide sequence