Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08675

Experiment: m.b. Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08670 and CA264_08675 are separated by 276 nucleotidesCA264_08675 and CA264_08680 are separated by 76 nucleotides CA264_08670: CA264_08670 - hypothetical protein, at 2,011,764 to 2,013,023 _08670 CA264_08675: CA264_08675 - hypothetical protein, at 2,013,300 to 2,014,349 _08675 CA264_08680: CA264_08680 - glycoside hydrolase, at 2,014,426 to 2,015,604 _08680 Position (kb) 2013 2014 2015Strain fitness (log2 ratio) -3 -2 -1 0 1at 2012.453 kb on - strand, within CA264_08670at 2012.608 kb on - strand, within CA264_08670at 2012.626 kb on + strand, within CA264_08670at 2012.812 kb on + strand, within CA264_08670at 2012.812 kb on + strand, within CA264_08670at 2012.896 kb on - strand, within CA264_08670at 2012.997 kb on - strandat 2012.997 kb on - strandat 2013.137 kb on - strandat 2013.278 kb on + strandat 2013.403 kb on - strandat 2013.542 kb on - strand, within CA264_08675at 2013.561 kb on + strand, within CA264_08675at 2013.561 kb on + strand, within CA264_08675at 2013.562 kb on - strand, within CA264_08675at 2013.562 kb on - strand, within CA264_08675at 2013.649 kb on + strand, within CA264_08675at 2013.650 kb on - strand, within CA264_08675at 2013.664 kb on + strand, within CA264_08675at 2013.667 kb on + strand, within CA264_08675at 2013.668 kb on - strand, within CA264_08675at 2013.668 kb on - strand, within CA264_08675at 2013.668 kb on - strand, within CA264_08675at 2013.688 kb on + strand, within CA264_08675at 2013.688 kb on + strand, within CA264_08675at 2013.688 kb on + strand, within CA264_08675at 2013.689 kb on - strand, within CA264_08675at 2013.689 kb on - strand, within CA264_08675at 2013.689 kb on - strand, within CA264_08675at 2013.762 kb on + strand, within CA264_08675at 2013.762 kb on + strand, within CA264_08675at 2013.762 kb on + strand, within CA264_08675at 2013.763 kb on - strand, within CA264_08675at 2013.781 kb on + strand, within CA264_08675at 2013.848 kb on + strand, within CA264_08675at 2013.848 kb on + strand, within CA264_08675at 2013.906 kb on + strand, within CA264_08675at 2014.017 kb on - strand, within CA264_08675at 2014.105 kb on - strand, within CA264_08675at 2014.105 kb on - strand, within CA264_08675at 2014.170 kb on - strand, within CA264_08675at 2014.217 kb on - strand, within CA264_08675at 2014.271 kb on - strandat 2014.300 kb on + strandat 2014.301 kb on - strandat 2014.408 kb on + strandat 2014.410 kb on + strandat 2014.433 kb on + strandat 2014.434 kb on - strandat 2014.434 kb on - strandat 2014.543 kb on - strandat 2014.543 kb on - strandat 2014.761 kb on + strand, within CA264_08680at 2014.762 kb on - strand, within CA264_08680at 2014.796 kb on - strand, within CA264_08680at 2015.007 kb on - strand, within CA264_08680at 2015.007 kb on - strand, within CA264_08680at 2015.063 kb on + strand, within CA264_08680at 2015.160 kb on - strand, within CA264_08680at 2015.204 kb on + strand, within CA264_08680at 2015.336 kb on - strand, within CA264_08680at 2015.341 kb on + strand, within CA264_08680at 2015.341 kb on + strand, within CA264_08680at 2015.341 kb on + strand, within CA264_08680

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
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2,012,453 - CA264_08670 0.55 -0.4
2,012,608 - CA264_08670 0.67 -0.2
2,012,626 + CA264_08670 0.68 +0.6
2,012,812 + CA264_08670 0.83 +1.1
2,012,812 + CA264_08670 0.83 -0.6
2,012,896 - CA264_08670 0.90 +0.6
2,012,997 - -0.1
2,012,997 - -0.3
2,013,137 - +0.5
2,013,278 + -0.2
2,013,403 - -0.7
2,013,542 - CA264_08675 0.23 -0.8
2,013,561 + CA264_08675 0.25 -0.5
2,013,561 + CA264_08675 0.25 -0.5
2,013,562 - CA264_08675 0.25 -0.9
2,013,562 - CA264_08675 0.25 +0.1
2,013,649 + CA264_08675 0.33 -0.3
2,013,650 - CA264_08675 0.33 -0.2
2,013,664 + CA264_08675 0.35 -0.1
2,013,667 + CA264_08675 0.35 +0.0
2,013,668 - CA264_08675 0.35 +0.4
2,013,668 - CA264_08675 0.35 +0.8
2,013,668 - CA264_08675 0.35 +0.1
2,013,688 + CA264_08675 0.37 +0.5
2,013,688 + CA264_08675 0.37 +0.5
2,013,688 + CA264_08675 0.37 +0.1
2,013,689 - CA264_08675 0.37 +0.3
2,013,689 - CA264_08675 0.37 -3.1
2,013,689 - CA264_08675 0.37 -0.1
2,013,762 + CA264_08675 0.44 +0.0
2,013,762 + CA264_08675 0.44 -1.4
2,013,762 + CA264_08675 0.44 +0.9
2,013,763 - CA264_08675 0.44 +1.4
2,013,781 + CA264_08675 0.46 +0.6
2,013,848 + CA264_08675 0.52 +0.2
2,013,848 + CA264_08675 0.52 +0.2
2,013,906 + CA264_08675 0.58 +1.1
2,014,017 - CA264_08675 0.68 +1.3
2,014,105 - CA264_08675 0.77 +0.1
2,014,105 - CA264_08675 0.77 +0.6
2,014,170 - CA264_08675 0.83 +1.7
2,014,217 - CA264_08675 0.87 -0.4
2,014,271 - -0.5
2,014,300 + -0.9
2,014,301 - -0.5
2,014,408 + -2.3
2,014,410 + +0.5
2,014,433 + +0.8
2,014,434 - -0.0
2,014,434 - +0.3
2,014,543 - +0.7
2,014,543 - +0.3
2,014,761 + CA264_08680 0.28 +0.6
2,014,762 - CA264_08680 0.28 +1.1
2,014,796 - CA264_08680 0.31 -0.7
2,015,007 - CA264_08680 0.49 -0.2
2,015,007 - CA264_08680 0.49 -1.6
2,015,063 + CA264_08680 0.54 -0.6
2,015,160 - CA264_08680 0.62 -0.0
2,015,204 + CA264_08680 0.66 +0.4
2,015,336 - CA264_08680 0.77 -1.2
2,015,341 + CA264_08680 0.78 -0.6
2,015,341 + CA264_08680 0.78 -0.2
2,015,341 + CA264_08680 0.78 +0.1

Or see this region's nucleotide sequence