Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06125

Experiment: m.b. Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06115 and CA264_06120 are separated by 6 nucleotidesCA264_06120 and CA264_06125 are separated by 99 nucleotidesCA264_06125 and CA264_06130 are separated by 10 nucleotides CA264_06115: CA264_06115 - acyl-CoA thioesterase, at 1,428,330 to 1,428,863 _06115 CA264_06120: CA264_06120 - hypothetical protein, at 1,428,870 to 1,429,535 _06120 CA264_06125: CA264_06125 - alkyl hydroperoxide reductase, at 1,429,635 to 1,430,753 _06125 CA264_06130: CA264_06130 - aspartyl/glutamyl-tRNA amidotransferase subunit B, at 1,430,764 to 1,432,221 _06130 Position (kb) 1429 1430 1431Strain fitness (log2 ratio) -1 0 1at 1428.679 kb on + strand, within CA264_06115at 1428.745 kb on + strand, within CA264_06115at 1428.746 kb on - strand, within CA264_06115at 1428.747 kb on + strand, within CA264_06115at 1428.838 kb on - strandat 1428.866 kb on - strandat 1429.538 kb on + strandat 1429.658 kb on + strandat 1429.740 kb on - strandat 1430.030 kb on + strand, within CA264_06125at 1430.100 kb on - strand, within CA264_06125at 1430.101 kb on + strand, within CA264_06125at 1430.101 kb on + strand, within CA264_06125at 1430.451 kb on + strand, within CA264_06125at 1430.452 kb on - strand, within CA264_06125at 1430.452 kb on - strand, within CA264_06125at 1430.610 kb on + strand, within CA264_06125at 1430.688 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
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1,428,679 + CA264_06115 0.65 -0.2
1,428,745 + CA264_06115 0.78 +0.1
1,428,746 - CA264_06115 0.78 -0.5
1,428,747 + CA264_06115 0.78 -0.2
1,428,838 - +0.3
1,428,866 - +1.3
1,429,538 + +0.2
1,429,658 + +0.8
1,429,740 - -0.4
1,430,030 + CA264_06125 0.35 -0.2
1,430,100 - CA264_06125 0.42 -0.7
1,430,101 + CA264_06125 0.42 -0.4
1,430,101 + CA264_06125 0.42 -0.8
1,430,451 + CA264_06125 0.73 -0.7
1,430,452 - CA264_06125 0.73 -0.6
1,430,452 - CA264_06125 0.73 -0.8
1,430,610 + CA264_06125 0.87 -0.7
1,430,688 - +0.9

Or see this region's nucleotide sequence