Experiment: m.b. Vancomycin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02885 and CA264_02890 are separated by 138 nucleotides CA264_02890 and CA264_02895 are separated by 188 nucleotides CA264_02895 and CA264_02900 are separated by 32 nucleotides CA264_02900 and CA264_02905 are separated by 90 nucleotides
CA264_02885: CA264_02885 - hypothetical protein, at 658,985 to 659,710
_02885
CA264_02890: CA264_02890 - hypothetical protein, at 659,849 to 660,490
_02890
CA264_02895: CA264_02895 - alpha/beta hydrolase, at 660,679 to 661,674
_02895
CA264_02900: CA264_02900 - hypothetical protein, at 661,707 to 661,934
_02900
CA264_02905: CA264_02905 - hypothetical protein, at 662,025 to 662,831
_02905
Position (kb)
660
661
662 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 659.695 kb on - strand at 659.709 kb on - strand at 659.709 kb on - strand at 659.709 kb on - strand at 659.842 kb on + strand at 659.843 kb on - strand at 659.843 kb on - strand at 659.846 kb on + strand at 659.847 kb on - strand at 659.847 kb on - strand at 659.850 kb on + strand at 659.863 kb on - strand at 659.944 kb on - strand, within CA264_02890 at 659.950 kb on - strand, within CA264_02890 at 660.117 kb on - strand, within CA264_02890 at 660.159 kb on + strand, within CA264_02890 at 660.164 kb on - strand, within CA264_02890 at 660.222 kb on + strand, within CA264_02890 at 660.253 kb on - strand, within CA264_02890 at 660.258 kb on + strand, within CA264_02890 at 660.354 kb on - strand, within CA264_02890 at 660.395 kb on + strand, within CA264_02890 at 660.421 kb on - strand, within CA264_02890 at 660.651 kb on + strand at 660.658 kb on - strand at 660.673 kb on + strand at 660.695 kb on + strand at 660.720 kb on - strand at 660.844 kb on + strand, within CA264_02895 at 660.844 kb on + strand, within CA264_02895 at 660.845 kb on - strand, within CA264_02895 at 660.926 kb on - strand, within CA264_02895 at 660.990 kb on - strand, within CA264_02895 at 661.019 kb on + strand, within CA264_02895 at 661.019 kb on + strand, within CA264_02895 at 661.019 kb on + strand, within CA264_02895 at 661.020 kb on - strand, within CA264_02895 at 661.020 kb on - strand, within CA264_02895 at 661.021 kb on + strand, within CA264_02895 at 661.021 kb on + strand, within CA264_02895 at 661.022 kb on - strand, within CA264_02895 at 661.024 kb on + strand, within CA264_02895 at 661.024 kb on + strand, within CA264_02895 at 661.126 kb on - strand, within CA264_02895 at 661.199 kb on - strand, within CA264_02895 at 661.216 kb on + strand, within CA264_02895 at 661.217 kb on - strand, within CA264_02895 at 661.237 kb on + strand, within CA264_02895 at 661.237 kb on + strand, within CA264_02895 at 661.291 kb on + strand, within CA264_02895 at 661.295 kb on - strand, within CA264_02895 at 661.295 kb on - strand, within CA264_02895 at 661.295 kb on - strand, within CA264_02895 at 661.396 kb on + strand, within CA264_02895 at 661.396 kb on + strand, within CA264_02895 at 661.396 kb on + strand, within CA264_02895 at 661.426 kb on + strand, within CA264_02895 at 661.442 kb on + strand, within CA264_02895 at 661.443 kb on - strand, within CA264_02895 at 661.467 kb on - strand, within CA264_02895 at 661.502 kb on - strand, within CA264_02895 at 661.503 kb on + strand, within CA264_02895 at 661.505 kb on + strand, within CA264_02895 at 661.505 kb on + strand, within CA264_02895 at 661.506 kb on - strand, within CA264_02895 at 661.506 kb on - strand, within CA264_02895 at 661.506 kb on - strand, within CA264_02895 at 661.550 kb on + strand, within CA264_02895 at 661.615 kb on - strand at 661.615 kb on - strand at 661.615 kb on - strand at 661.616 kb on + strand at 661.617 kb on - strand at 661.617 kb on - strand at 661.807 kb on + strand, within CA264_02900 at 661.808 kb on - strand, within CA264_02900 at 661.808 kb on - strand, within CA264_02900 at 661.874 kb on + strand, within CA264_02900 at 661.875 kb on - strand, within CA264_02900 at 661.916 kb on - strand at 661.918 kb on - strand at 661.943 kb on - strand at 661.944 kb on + strand at 661.975 kb on + strand at 662.002 kb on + strand at 662.002 kb on + strand at 662.002 kb on + strand at 662.003 kb on - strand at 662.019 kb on - strand at 662.085 kb on + strand at 662.085 kb on + strand at 662.086 kb on - strand at 662.086 kb on - strand at 662.086 kb on - strand at 662.087 kb on + strand at 662.087 kb on + strand at 662.087 kb on + strand at 662.087 kb on + strand at 662.088 kb on - strand at 662.088 kb on - strand at 662.093 kb on + strand at 662.094 kb on - strand at 662.196 kb on + strand, within CA264_02905 at 662.197 kb on - strand, within CA264_02905 at 662.197 kb on - strand, within CA264_02905 at 662.197 kb on - strand, within CA264_02905 at 662.236 kb on + strand, within CA264_02905 at 662.241 kb on + strand, within CA264_02905 at 662.242 kb on - strand, within CA264_02905 at 662.355 kb on + strand, within CA264_02905 at 662.356 kb on - strand, within CA264_02905 at 662.356 kb on - strand, within CA264_02905 at 662.357 kb on + strand, within CA264_02905 at 662.357 kb on + strand, within CA264_02905 at 662.444 kb on + strand, within CA264_02905 at 662.648 kb on + strand, within CA264_02905
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml remove 659,695 - -0.3 659,709 - +0.8 659,709 - -0.5 659,709 - -1.2 659,842 + -0.8 659,843 - -0.9 659,843 - +0.5 659,846 + +1.1 659,847 - -0.1 659,847 - +0.9 659,850 + +0.3 659,863 - -0.0 659,944 - CA264_02890 0.15 -0.8 659,950 - CA264_02890 0.16 -0.4 660,117 - CA264_02890 0.42 -0.3 660,159 + CA264_02890 0.48 -0.1 660,164 - CA264_02890 0.49 -1.0 660,222 + CA264_02890 0.58 -1.1 660,253 - CA264_02890 0.63 +1.1 660,258 + CA264_02890 0.64 +0.4 660,354 - CA264_02890 0.79 -1.0 660,395 + CA264_02890 0.85 -0.5 660,421 - CA264_02890 0.89 +0.3 660,651 + -1.3 660,658 - -0.6 660,673 + -1.2 660,695 + -0.2 660,720 - -0.0 660,844 + CA264_02895 0.17 +0.4 660,844 + CA264_02895 0.17 -0.1 660,845 - CA264_02895 0.17 +0.0 660,926 - CA264_02895 0.25 -0.0 660,990 - CA264_02895 0.31 -2.5 661,019 + CA264_02895 0.34 -0.0 661,019 + CA264_02895 0.34 -0.2 661,019 + CA264_02895 0.34 -1.0 661,020 - CA264_02895 0.34 -0.3 661,020 - CA264_02895 0.34 +1.8 661,021 + CA264_02895 0.34 -0.3 661,021 + CA264_02895 0.34 -1.0 661,022 - CA264_02895 0.34 -0.1 661,024 + CA264_02895 0.35 -0.7 661,024 + CA264_02895 0.35 -0.3 661,126 - CA264_02895 0.45 +0.1 661,199 - CA264_02895 0.52 -1.2 661,216 + CA264_02895 0.54 +0.4 661,217 - CA264_02895 0.54 -0.3 661,237 + CA264_02895 0.56 +0.6 661,237 + CA264_02895 0.56 +0.6 661,291 + CA264_02895 0.61 +0.1 661,295 - CA264_02895 0.62 +0.7 661,295 - CA264_02895 0.62 +1.0 661,295 - CA264_02895 0.62 -0.2 661,396 + CA264_02895 0.72 -0.0 661,396 + CA264_02895 0.72 -0.6 661,396 + CA264_02895 0.72 +0.1 661,426 + CA264_02895 0.75 -0.1 661,442 + CA264_02895 0.77 +0.1 661,443 - CA264_02895 0.77 -1.2 661,467 - CA264_02895 0.79 +0.1 661,502 - CA264_02895 0.83 +1.5 661,503 + CA264_02895 0.83 -1.2 661,505 + CA264_02895 0.83 +0.3 661,505 + CA264_02895 0.83 -0.2 661,506 - CA264_02895 0.83 +0.0 661,506 - CA264_02895 0.83 -0.8 661,506 - CA264_02895 0.83 -0.6 661,550 + CA264_02895 0.87 -0.4 661,615 - +0.9 661,615 - +0.2 661,615 - -0.9 661,616 + -0.2 661,617 - -2.3 661,617 - +0.1 661,807 + CA264_02900 0.44 -0.9 661,808 - CA264_02900 0.44 -0.6 661,808 - CA264_02900 0.44 +0.3 661,874 + CA264_02900 0.73 +0.1 661,875 - CA264_02900 0.74 +0.8 661,916 - -0.4 661,918 - -0.2 661,943 - +0.3 661,944 + +0.1 661,975 + -0.0 662,002 + +0.0 662,002 + +0.0 662,002 + +0.1 662,003 - +1.3 662,019 - -0.1 662,085 + -1.4 662,085 + -0.4 662,086 - +0.5 662,086 - -2.0 662,086 - -0.3 662,087 + +1.2 662,087 + -2.0 662,087 + -0.2 662,087 + -0.0 662,088 - +0.9 662,088 - -1.0 662,093 + -1.0 662,094 - +1.3 662,196 + CA264_02905 0.21 +0.7 662,197 - CA264_02905 0.21 -0.5 662,197 - CA264_02905 0.21 -1.1 662,197 - CA264_02905 0.21 -0.4 662,236 + CA264_02905 0.26 +1.1 662,241 + CA264_02905 0.27 -0.5 662,242 - CA264_02905 0.27 +0.2 662,355 + CA264_02905 0.41 +0.4 662,356 - CA264_02905 0.41 -0.0 662,356 - CA264_02905 0.41 -0.7 662,357 + CA264_02905 0.41 -0.3 662,357 + CA264_02905 0.41 +1.1 662,444 + CA264_02905 0.52 -0.3 662,648 + CA264_02905 0.77 +0.5
Or see this region's nucleotide sequence