Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02580

Experiment: m.b. Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02565 and CA264_02570 are separated by 11 nucleotidesCA264_02570 and CA264_02575 are separated by 236 nucleotidesCA264_02575 and CA264_02580 are separated by 86 nucleotidesCA264_02580 and CA264_02585 are separated by 7 nucleotidesCA264_02585 and CA264_02590 are separated by 219 nucleotides CA264_02565: CA264_02565 - hypothetical protein, at 599,440 to 599,706 _02565 CA264_02570: CA264_02570 - hypothetical protein, at 599,718 to 600,008 _02570 CA264_02575: CA264_02575 - potassium transporter KefB, at 600,245 to 600,583 _02575 CA264_02580: CA264_02580 - transcriptional regulator, at 600,670 to 600,978 _02580 CA264_02585: CA264_02585 - hypothetical protein, at 600,986 to 601,609 _02585 CA264_02590: CA264_02590 - ribosomal subunit interface protein, at 601,829 to 602,134 _02590 Position (kb) 600 601Strain fitness (log2 ratio) -2 -1 0 1 2at 599.681 kb on + strandat 599.681 kb on + strandat 599.681 kb on + strandat 599.746 kb on - strandat 599.788 kb on - strand, within CA264_02570at 599.890 kb on - strand, within CA264_02570at 599.931 kb on + strand, within CA264_02570at 599.931 kb on + strand, within CA264_02570at 599.932 kb on - strand, within CA264_02570at 599.985 kb on - strandat 599.985 kb on - strandat 600.008 kb on + strandat 600.078 kb on - strandat 600.099 kb on + strandat 600.099 kb on + strandat 600.099 kb on + strandat 600.136 kb on + strandat 600.171 kb on - strandat 600.191 kb on + strandat 600.192 kb on - strandat 600.221 kb on - strandat 600.303 kb on + strand, within CA264_02575at 600.304 kb on - strand, within CA264_02575at 600.304 kb on - strand, within CA264_02575at 600.305 kb on + strand, within CA264_02575at 600.323 kb on - strand, within CA264_02575at 600.323 kb on - strand, within CA264_02575at 600.324 kb on + strand, within CA264_02575at 600.428 kb on - strand, within CA264_02575at 600.589 kb on + strandat 600.599 kb on - strandat 600.603 kb on + strandat 600.715 kb on + strand, within CA264_02580at 600.715 kb on + strand, within CA264_02580at 600.715 kb on + strand, within CA264_02580at 600.716 kb on - strand, within CA264_02580at 600.759 kb on - strand, within CA264_02580at 600.951 kb on + strandat 600.955 kb on + strandat 600.955 kb on + strandat 600.956 kb on - strandat 600.956 kb on - strandat 600.957 kb on + strandat 600.964 kb on + strandat 600.964 kb on + strandat 600.964 kb on + strandat 600.965 kb on - strandat 600.980 kb on + strandat 601.005 kb on + strandat 601.007 kb on + strandat 601.008 kb on - strandat 601.020 kb on + strandat 601.020 kb on + strandat 601.025 kb on + strandat 601.025 kb on + strandat 601.025 kb on + strandat 601.026 kb on - strandat 601.081 kb on - strand, within CA264_02585at 601.157 kb on - strand, within CA264_02585at 601.196 kb on + strand, within CA264_02585at 601.226 kb on + strand, within CA264_02585at 601.271 kb on + strand, within CA264_02585at 601.440 kb on + strand, within CA264_02585at 601.440 kb on + strand, within CA264_02585at 601.441 kb on - strand, within CA264_02585at 601.445 kb on + strand, within CA264_02585at 601.446 kb on - strand, within CA264_02585at 601.446 kb on - strand, within CA264_02585at 601.487 kb on + strand, within CA264_02585at 601.559 kb on - strandat 601.559 kb on - strandat 601.647 kb on - strandat 601.667 kb on + strandat 601.668 kb on - strandat 601.668 kb on - strandat 601.669 kb on + strandat 601.669 kb on + strandat 601.669 kb on + strandat 601.674 kb on + strandat 601.680 kb on - strandat 601.759 kb on + strandat 601.815 kb on + strandat 601.835 kb on + strandat 601.836 kb on - strandat 601.836 kb on - strandat 601.837 kb on + strandat 601.857 kb on + strandat 601.869 kb on + strand, within CA264_02590at 601.870 kb on - strand, within CA264_02590at 601.885 kb on - strand, within CA264_02590at 601.903 kb on - strand, within CA264_02590at 601.903 kb on - strand, within CA264_02590

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
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599,681 + -0.1
599,681 + +0.9
599,681 + +0.2
599,746 - +0.4
599,788 - CA264_02570 0.24 +0.9
599,890 - CA264_02570 0.59 +0.7
599,931 + CA264_02570 0.73 -0.3
599,931 + CA264_02570 0.73 -0.3
599,932 - CA264_02570 0.74 +0.8
599,985 - +0.9
599,985 - +0.6
600,008 + +0.3
600,078 - +1.0
600,099 + +0.2
600,099 + +0.3
600,099 + +0.7
600,136 + +0.2
600,171 - +0.2
600,191 + -0.3
600,192 - +1.3
600,221 - -0.7
600,303 + CA264_02575 0.17 -0.8
600,304 - CA264_02575 0.17 -0.7
600,304 - CA264_02575 0.17 -0.8
600,305 + CA264_02575 0.18 -0.1
600,323 - CA264_02575 0.23 +0.4
600,323 - CA264_02575 0.23 -0.5
600,324 + CA264_02575 0.23 +0.1
600,428 - CA264_02575 0.54 +0.7
600,589 + -0.1
600,599 - +0.8
600,603 + +0.8
600,715 + CA264_02580 0.15 -0.1
600,715 + CA264_02580 0.15 +0.3
600,715 + CA264_02580 0.15 +0.2
600,716 - CA264_02580 0.15 -0.1
600,759 - CA264_02580 0.29 +0.2
600,951 + +0.9
600,955 + -0.7
600,955 + -0.2
600,956 - +0.3
600,956 - +1.4
600,957 + -0.2
600,964 + -0.4
600,964 + -0.2
600,964 + +0.2
600,965 - +0.6
600,980 + +0.6
601,005 + -0.3
601,007 + -0.4
601,008 - -0.1
601,020 + -0.1
601,020 + -0.1
601,025 + -0.1
601,025 + +0.5
601,025 + -0.5
601,026 - -0.1
601,081 - CA264_02585 0.15 -0.2
601,157 - CA264_02585 0.27 +0.2
601,196 + CA264_02585 0.34 -0.9
601,226 + CA264_02585 0.38 -1.1
601,271 + CA264_02585 0.46 +0.2
601,440 + CA264_02585 0.73 +0.3
601,440 + CA264_02585 0.73 -1.4
601,441 - CA264_02585 0.73 +0.4
601,445 + CA264_02585 0.74 +0.2
601,446 - CA264_02585 0.74 -0.0
601,446 - CA264_02585 0.74 -0.1
601,487 + CA264_02585 0.80 +1.5
601,559 - +0.1
601,559 - -0.4
601,647 - +1.5
601,667 + -2.0
601,668 - -0.0
601,668 - -1.1
601,669 + -1.4
601,669 + +0.4
601,669 + -0.4
601,674 + +0.3
601,680 - +0.2
601,759 + -0.2
601,815 + -0.5
601,835 + -0.1
601,836 - -0.0
601,836 - -0.1
601,837 + -1.5
601,857 + -1.8
601,869 + CA264_02590 0.13 -0.9
601,870 - CA264_02590 0.13 +2.5
601,885 - CA264_02590 0.18 -0.0
601,903 - CA264_02590 0.24 -0.1
601,903 - CA264_02590 0.24 -0.6

Or see this region's nucleotide sequence