Experiment: m.b. Vancomycin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01635 and CA264_01640 are separated by 253 nucleotides CA264_01640 and CA264_01645 are separated by 354 nucleotides CA264_01645 and CA264_01650 are separated by 168 nucleotides
CA264_01635: CA264_01635 - nicotinamidase, at 384,893 to 385,504
_01635
CA264_01640: CA264_01640 - DEAD/DEAH box helicase, at 385,758 to 387,176
_01640
CA264_01645: CA264_01645 - hypothetical protein, at 387,531 to 387,713
_01645
CA264_01650: CA264_01650 - YebC/PmpR family DNA-binding transcriptional regulator, at 387,882 to 388,637
_01650
Position (kb) 385
386
387
388 Strain fitness (log2 ratio) -2
-1
0
1
2 at 384.784 kb on + strand at 384.796 kb on + strand at 384.815 kb on - strand at 384.872 kb on - strand at 384.872 kb on - strand at 384.873 kb on + strand at 384.873 kb on + strand at 384.874 kb on - strand at 384.907 kb on + strand at 384.942 kb on - strand at 385.000 kb on + strand, within CA264_01635 at 385.000 kb on + strand, within CA264_01635 at 385.000 kb on + strand, within CA264_01635 at 385.006 kb on - strand, within CA264_01635 at 385.006 kb on - strand, within CA264_01635 at 385.056 kb on + strand, within CA264_01635 at 385.099 kb on + strand, within CA264_01635 at 385.100 kb on - strand, within CA264_01635 at 385.161 kb on + strand, within CA264_01635 at 385.161 kb on + strand, within CA264_01635 at 385.162 kb on - strand, within CA264_01635 at 385.170 kb on - strand, within CA264_01635 at 385.301 kb on + strand, within CA264_01635 at 385.302 kb on - strand, within CA264_01635 at 385.478 kb on + strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.484 kb on + strand at 385.487 kb on + strand at 385.493 kb on + strand at 385.504 kb on + strand at 385.504 kb on + strand at 385.504 kb on + strand at 385.504 kb on + strand at 385.505 kb on - strand at 385.505 kb on - strand at 385.505 kb on - strand at 385.508 kb on - strand at 385.508 kb on - strand at 385.514 kb on + strand at 385.517 kb on + strand at 385.517 kb on + strand at 385.518 kb on - strand at 385.518 kb on - strand at 385.518 kb on - strand at 385.524 kb on - strand at 385.543 kb on + strand at 385.543 kb on + strand at 385.543 kb on + strand at 385.545 kb on + strand at 385.545 kb on + strand at 385.546 kb on - strand at 385.546 kb on - strand at 385.546 kb on - strand at 385.546 kb on - strand at 385.546 kb on - strand at 385.547 kb on + strand at 385.548 kb on - strand at 385.692 kb on + strand at 385.692 kb on + strand at 385.693 kb on - strand at 385.760 kb on - strand at 385.814 kb on + strand at 385.814 kb on + strand at 386.201 kb on + strand, within CA264_01640 at 386.255 kb on - strand, within CA264_01640 at 386.255 kb on - strand, within CA264_01640 at 386.486 kb on + strand, within CA264_01640 at 386.486 kb on + strand, within CA264_01640 at 386.487 kb on - strand, within CA264_01640 at 386.487 kb on - strand, within CA264_01640 at 386.558 kb on - strand, within CA264_01640 at 386.558 kb on - strand, within CA264_01640 at 386.558 kb on - strand, within CA264_01640 at 386.580 kb on + strand, within CA264_01640 at 386.582 kb on + strand, within CA264_01640 at 386.583 kb on - strand, within CA264_01640 at 386.802 kb on + strand, within CA264_01640 at 386.806 kb on + strand, within CA264_01640 at 386.806 kb on + strand, within CA264_01640 at 386.850 kb on - strand, within CA264_01640 at 386.853 kb on - strand, within CA264_01640 at 386.973 kb on + strand, within CA264_01640 at 386.974 kb on - strand, within CA264_01640 at 386.974 kb on - strand, within CA264_01640 at 386.974 kb on - strand, within CA264_01640 at 387.029 kb on - strand, within CA264_01640 at 387.053 kb on + strand at 387.054 kb on - strand at 387.169 kb on + strand at 387.254 kb on - strand at 387.295 kb on - strand at 387.300 kb on + strand at 387.301 kb on - strand at 387.304 kb on - strand at 387.306 kb on - strand at 387.306 kb on - strand at 387.310 kb on - strand at 387.354 kb on + strand at 387.383 kb on + strand at 387.471 kb on + strand at 387.471 kb on + strand at 387.471 kb on + strand at 387.471 kb on + strand at 387.472 kb on - strand at 387.472 kb on - strand at 387.472 kb on - strand at 387.503 kb on + strand at 387.504 kb on - strand at 387.530 kb on - strand at 387.579 kb on - strand, within CA264_01645 at 387.633 kb on + strand, within CA264_01645 at 387.683 kb on + strand, within CA264_01645 at 387.690 kb on + strand, within CA264_01645 at 387.741 kb on + strand at 387.882 kb on - strand at 387.953 kb on - strand at 388.040 kb on - strand, within CA264_01650 at 388.040 kb on - strand, within CA264_01650 at 388.040 kb on - strand, within CA264_01650 at 388.138 kb on - strand, within CA264_01650 at 388.171 kb on - strand, within CA264_01650 at 388.171 kb on - strand, within CA264_01650 at 388.171 kb on - strand, within CA264_01650
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml remove 384,784 + -0.8 384,796 + -0.3 384,815 - +0.7 384,872 - -0.5 384,872 - +0.1 384,873 + -0.1 384,873 + -0.4 384,874 - -0.2 384,907 + +0.2 384,942 - +1.0 385,000 + CA264_01635 0.17 -1.2 385,000 + CA264_01635 0.17 +0.7 385,000 + CA264_01635 0.17 -0.2 385,006 - CA264_01635 0.18 +0.4 385,006 - CA264_01635 0.18 -1.0 385,056 + CA264_01635 0.27 +1.6 385,099 + CA264_01635 0.34 -0.2 385,100 - CA264_01635 0.34 -0.4 385,161 + CA264_01635 0.44 +0.1 385,161 + CA264_01635 0.44 +0.3 385,162 - CA264_01635 0.44 -0.2 385,170 - CA264_01635 0.45 +0.4 385,301 + CA264_01635 0.67 -0.4 385,302 - CA264_01635 0.67 -0.2 385,478 + +0.1 385,479 - +1.4 385,479 - +0.3 385,479 - -0.2 385,479 - +0.6 385,479 - -0.5 385,479 - +0.2 385,484 + +2.3 385,487 + -0.3 385,493 + +0.6 385,504 + +0.6 385,504 + -0.9 385,504 + +0.8 385,504 + +0.0 385,505 - +0.3 385,505 - -0.3 385,505 - -0.2 385,508 - -1.1 385,508 - +0.8 385,514 + -0.7 385,517 + -0.8 385,517 + +0.7 385,518 - +0.7 385,518 - -0.6 385,518 - +0.1 385,524 - +0.1 385,543 + -0.2 385,543 + +1.0 385,543 + -0.0 385,545 + +1.2 385,545 + +1.3 385,546 - -0.9 385,546 - -0.1 385,546 - -0.2 385,546 - +0.1 385,546 - -0.1 385,547 + +0.4 385,548 - -0.0 385,692 + +0.8 385,692 + -0.0 385,693 - -0.2 385,760 - -0.7 385,814 + +0.7 385,814 + -0.7 386,201 + CA264_01640 0.31 -2.7 386,255 - CA264_01640 0.35 -2.7 386,255 - CA264_01640 0.35 -0.3 386,486 + CA264_01640 0.51 -1.9 386,486 + CA264_01640 0.51 -0.5 386,487 - CA264_01640 0.51 -0.8 386,487 - CA264_01640 0.51 -0.9 386,558 - CA264_01640 0.56 -0.4 386,558 - CA264_01640 0.56 -1.0 386,558 - CA264_01640 0.56 -1.3 386,580 + CA264_01640 0.58 -0.0 386,582 + CA264_01640 0.58 -2.5 386,583 - CA264_01640 0.58 -2.6 386,802 + CA264_01640 0.74 -1.2 386,806 + CA264_01640 0.74 -0.5 386,806 + CA264_01640 0.74 -0.8 386,850 - CA264_01640 0.77 -0.2 386,853 - CA264_01640 0.77 -1.3 386,973 + CA264_01640 0.86 -1.1 386,974 - CA264_01640 0.86 -0.4 386,974 - CA264_01640 0.86 -1.5 386,974 - CA264_01640 0.86 +0.1 387,029 - CA264_01640 0.90 -1.3 387,053 + -0.7 387,054 - -2.0 387,169 + -0.7 387,254 - +0.4 387,295 - -1.2 387,300 + -0.6 387,301 - -0.2 387,304 - -0.1 387,306 - +0.2 387,306 - +0.1 387,310 - +0.5 387,354 + -0.4 387,383 + -0.8 387,471 + -0.3 387,471 + -0.6 387,471 + -1.3 387,471 + -0.6 387,472 - -1.5 387,472 - +0.7 387,472 - +0.8 387,503 + -1.5 387,504 - -0.5 387,530 - +0.8 387,579 - CA264_01645 0.26 -1.7 387,633 + CA264_01645 0.56 -2.0 387,683 + CA264_01645 0.83 -0.1 387,690 + CA264_01645 0.87 +0.2 387,741 + +1.2 387,882 - -0.1 387,953 - +1.3 388,040 - CA264_01650 0.21 -0.8 388,040 - CA264_01650 0.21 +0.2 388,040 - CA264_01650 0.21 +0.3 388,138 - CA264_01650 0.34 +1.0 388,171 - CA264_01650 0.38 -0.6 388,171 - CA264_01650 0.38 -0.6 388,171 - CA264_01650 0.38 -0.2
Or see this region's nucleotide sequence