Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01525

Experiment: m.b. Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01520 and CA264_01525 are separated by 372 nucleotidesCA264_01525 and CA264_01530 are separated by 85 nucleotides CA264_01520: CA264_01520 - adenylosuccinate lyase, at 358,894 to 360,246 _01520 CA264_01525: CA264_01525 - penicillin-binding protein, at 360,619 to 362,601 _01525 CA264_01530: CA264_01530 - hypothetical protein, at 362,687 to 363,730 _01530 Position (kb) 360 361 362 363Strain fitness (log2 ratio) -2 -1 0 1 2at 360.249 kb on + strandat 360.277 kb on + strandat 360.295 kb on + strandat 360.295 kb on + strandat 360.380 kb on + strandat 360.412 kb on - strandat 360.430 kb on + strandat 360.459 kb on + strandat 360.459 kb on + strandat 360.460 kb on - strandat 360.464 kb on + strandat 360.464 kb on + strandat 360.465 kb on - strandat 360.465 kb on - strandat 360.465 kb on - strandat 360.467 kb on - strandat 360.467 kb on - strandat 360.467 kb on - strandat 360.484 kb on + strandat 360.485 kb on - strandat 360.485 kb on - strandat 360.494 kb on - strandat 360.494 kb on - strandat 360.496 kb on - strandat 360.496 kb on - strandat 360.497 kb on + strandat 360.497 kb on + strandat 360.497 kb on + strandat 360.498 kb on - strandat 360.500 kb on + strandat 360.501 kb on - strandat 360.507 kb on + strandat 360.527 kb on + strandat 360.527 kb on + strandat 360.527 kb on + strandat 360.527 kb on + strandat 360.528 kb on - strandat 360.528 kb on - strandat 360.530 kb on - strandat 360.534 kb on + strandat 360.534 kb on + strandat 360.534 kb on + strandat 360.534 kb on + strandat 360.534 kb on + strandat 360.535 kb on - strandat 360.536 kb on + strandat 360.537 kb on - strandat 360.552 kb on - strandat 360.566 kb on + strandat 360.566 kb on + strandat 360.570 kb on + strandat 360.580 kb on - strandat 360.586 kb on + strandat 360.587 kb on - strandat 360.601 kb on + strandat 360.603 kb on + strandat 360.690 kb on + strandat 360.690 kb on + strandat 360.691 kb on - strandat 360.691 kb on - strandat 360.715 kb on + strandat 360.715 kb on + strandat 360.716 kb on - strandat 360.717 kb on + strandat 360.717 kb on + strandat 360.717 kb on + strandat 360.718 kb on - strandat 360.729 kb on + strandat 360.754 kb on + strandat 360.869 kb on + strand, within CA264_01525at 360.869 kb on + strand, within CA264_01525at 360.870 kb on - strand, within CA264_01525at 360.870 kb on - strand, within CA264_01525at 360.870 kb on - strand, within CA264_01525at 360.870 kb on - strand, within CA264_01525at 360.870 kb on - strand, within CA264_01525at 360.871 kb on + strand, within CA264_01525at 361.129 kb on + strand, within CA264_01525at 361.205 kb on + strand, within CA264_01525at 361.207 kb on + strand, within CA264_01525at 361.292 kb on - strand, within CA264_01525at 361.324 kb on + strand, within CA264_01525at 361.324 kb on + strand, within CA264_01525at 361.325 kb on - strand, within CA264_01525at 361.329 kb on - strand, within CA264_01525at 361.329 kb on - strand, within CA264_01525at 361.329 kb on - strand, within CA264_01525at 361.329 kb on - strand, within CA264_01525at 361.329 kb on - strand, within CA264_01525at 361.405 kb on - strand, within CA264_01525at 361.416 kb on - strand, within CA264_01525at 361.511 kb on + strand, within CA264_01525at 361.531 kb on + strand, within CA264_01525at 361.531 kb on + strand, within CA264_01525at 361.531 kb on + strand, within CA264_01525at 361.532 kb on - strand, within CA264_01525at 361.586 kb on - strand, within CA264_01525at 361.595 kb on - strand, within CA264_01525at 361.595 kb on - strand, within CA264_01525at 361.620 kb on - strand, within CA264_01525at 361.748 kb on + strand, within CA264_01525at 361.749 kb on - strand, within CA264_01525at 361.749 kb on - strand, within CA264_01525at 361.838 kb on + strand, within CA264_01525at 361.839 kb on - strand, within CA264_01525at 361.873 kb on + strand, within CA264_01525at 361.873 kb on + strand, within CA264_01525at 361.969 kb on - strand, within CA264_01525at 361.997 kb on - strand, within CA264_01525at 362.189 kb on + strand, within CA264_01525at 362.190 kb on - strand, within CA264_01525at 362.190 kb on - strand, within CA264_01525at 362.190 kb on - strand, within CA264_01525at 362.218 kb on + strand, within CA264_01525at 362.218 kb on + strand, within CA264_01525at 362.219 kb on - strand, within CA264_01525at 362.230 kb on - strand, within CA264_01525at 362.230 kb on - strand, within CA264_01525at 362.395 kb on + strand, within CA264_01525at 362.395 kb on + strand, within CA264_01525at 362.396 kb on - strand, within CA264_01525at 362.396 kb on - strand, within CA264_01525at 362.628 kb on + strandat 362.629 kb on - strandat 362.676 kb on + strandat 362.676 kb on + strandat 362.706 kb on + strandat 362.794 kb on + strand, within CA264_01530at 362.795 kb on - strand, within CA264_01530at 362.871 kb on - strand, within CA264_01530at 362.871 kb on - strand, within CA264_01530at 362.885 kb on - strand, within CA264_01530at 362.897 kb on + strand, within CA264_01530at 362.898 kb on - strand, within CA264_01530at 362.937 kb on + strand, within CA264_01530at 363.172 kb on + strand, within CA264_01530at 363.218 kb on - strand, within CA264_01530at 363.218 kb on - strand, within CA264_01530at 363.218 kb on - strand, within CA264_01530at 363.232 kb on + strand, within CA264_01530at 363.232 kb on + strand, within CA264_01530at 363.233 kb on - strand, within CA264_01530at 363.362 kb on - strand, within CA264_01530at 363.383 kb on - strand, within CA264_01530at 363.425 kb on + strand, within CA264_01530at 363.445 kb on + strand, within CA264_01530at 363.445 kb on + strand, within CA264_01530at 363.446 kb on - strand, within CA264_01530at 363.446 kb on - strand, within CA264_01530at 363.446 kb on - strand, within CA264_01530at 363.447 kb on + strand, within CA264_01530at 363.447 kb on + strand, within CA264_01530at 363.448 kb on - strand, within CA264_01530at 363.472 kb on - strand, within CA264_01530at 363.485 kb on + strand, within CA264_01530at 363.494 kb on - strand, within CA264_01530at 363.497 kb on + strand, within CA264_01530at 363.498 kb on - strand, within CA264_01530

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
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360,249 + -0.4
360,277 + -0.8
360,295 + -0.9
360,295 + -1.1
360,380 + -0.6
360,412 - -0.5
360,430 + -1.8
360,459 + -0.9
360,459 + +1.0
360,460 - +0.5
360,464 + +0.5
360,464 + -0.7
360,465 - -0.3
360,465 - -0.2
360,465 - -0.7
360,467 - -1.2
360,467 - -0.0
360,467 - +0.0
360,484 + -1.3
360,485 - -0.2
360,485 - -0.3
360,494 - -1.2
360,494 - -1.1
360,496 - +0.2
360,496 - -0.4
360,497 + -1.4
360,497 + -0.6
360,497 + -1.0
360,498 - -1.3
360,500 + -2.0
360,501 - -0.7
360,507 + -0.6
360,527 + -0.8
360,527 + -0.7
360,527 + +0.1
360,527 + -0.5
360,528 - -1.7
360,528 - +1.0
360,530 - -1.3
360,534 + -0.5
360,534 + -0.4
360,534 + -1.8
360,534 + -0.2
360,534 + +2.1
360,535 - -1.2
360,536 + -1.2
360,537 - -0.8
360,552 - -0.3
360,566 + -0.4
360,566 + -0.9
360,570 + -1.0
360,580 - -0.6
360,586 + -0.7
360,587 - -0.1
360,601 + -0.5
360,603 + -0.8
360,690 + -0.0
360,690 + +0.6
360,691 - -1.0
360,691 - -0.6
360,715 + -0.2
360,715 + +0.6
360,716 - -0.1
360,717 + +0.2
360,717 + -0.1
360,717 + +0.8
360,718 - -0.7
360,729 + -0.6
360,754 + +0.5
360,869 + CA264_01525 0.13 +0.1
360,869 + CA264_01525 0.13 +0.1
360,870 - CA264_01525 0.13 -0.3
360,870 - CA264_01525 0.13 -0.6
360,870 - CA264_01525 0.13 +0.2
360,870 - CA264_01525 0.13 -0.1
360,870 - CA264_01525 0.13 -0.2
360,871 + CA264_01525 0.13 +1.3
361,129 + CA264_01525 0.26 +0.2
361,205 + CA264_01525 0.30 -0.4
361,207 + CA264_01525 0.30 +0.2
361,292 - CA264_01525 0.34 +0.1
361,324 + CA264_01525 0.36 -0.4
361,324 + CA264_01525 0.36 -0.2
361,325 - CA264_01525 0.36 -0.5
361,329 - CA264_01525 0.36 +0.2
361,329 - CA264_01525 0.36 +0.8
361,329 - CA264_01525 0.36 +0.5
361,329 - CA264_01525 0.36 -0.0
361,329 - CA264_01525 0.36 +0.8
361,405 - CA264_01525 0.40 +0.0
361,416 - CA264_01525 0.40 +2.0
361,511 + CA264_01525 0.45 -0.5
361,531 + CA264_01525 0.46 +0.2
361,531 + CA264_01525 0.46 -0.4
361,531 + CA264_01525 0.46 -0.6
361,532 - CA264_01525 0.46 -0.5
361,586 - CA264_01525 0.49 +0.5
361,595 - CA264_01525 0.49 -0.0
361,595 - CA264_01525 0.49 +0.0
361,620 - CA264_01525 0.50 +0.2
361,748 + CA264_01525 0.57 +0.7
361,749 - CA264_01525 0.57 -0.1
361,749 - CA264_01525 0.57 -0.0
361,838 + CA264_01525 0.61 +0.2
361,839 - CA264_01525 0.62 +0.2
361,873 + CA264_01525 0.63 -0.1
361,873 + CA264_01525 0.63 +1.0
361,969 - CA264_01525 0.68 +0.3
361,997 - CA264_01525 0.69 -0.1
362,189 + CA264_01525 0.79 -0.3
362,190 - CA264_01525 0.79 -1.1
362,190 - CA264_01525 0.79 +0.3
362,190 - CA264_01525 0.79 +0.2
362,218 + CA264_01525 0.81 +1.3
362,218 + CA264_01525 0.81 +1.4
362,219 - CA264_01525 0.81 +0.1
362,230 - CA264_01525 0.81 -0.8
362,230 - CA264_01525 0.81 +1.6
362,395 + CA264_01525 0.90 +0.1
362,395 + CA264_01525 0.90 -2.0
362,396 - CA264_01525 0.90 +0.0
362,396 - CA264_01525 0.90 +0.2
362,628 + +0.2
362,629 - +0.3
362,676 + -0.1
362,676 + -0.6
362,706 + +1.4
362,794 + CA264_01530 0.10 +1.4
362,795 - CA264_01530 0.10 -0.2
362,871 - CA264_01530 0.18 +0.1
362,871 - CA264_01530 0.18 -0.1
362,885 - CA264_01530 0.19 +1.0
362,897 + CA264_01530 0.20 -0.3
362,898 - CA264_01530 0.20 +0.2
362,937 + CA264_01530 0.24 +0.3
363,172 + CA264_01530 0.46 +0.6
363,218 - CA264_01530 0.51 -0.2
363,218 - CA264_01530 0.51 -0.2
363,218 - CA264_01530 0.51 +0.9
363,232 + CA264_01530 0.52 -1.2
363,232 + CA264_01530 0.52 +0.1
363,233 - CA264_01530 0.52 -0.4
363,362 - CA264_01530 0.65 -1.3
363,383 - CA264_01530 0.67 -0.6
363,425 + CA264_01530 0.71 +0.4
363,445 + CA264_01530 0.73 +0.6
363,445 + CA264_01530 0.73 -0.9
363,446 - CA264_01530 0.73 +0.4
363,446 - CA264_01530 0.73 +0.1
363,446 - CA264_01530 0.73 -0.6
363,447 + CA264_01530 0.73 +0.1
363,447 + CA264_01530 0.73 +0.1
363,448 - CA264_01530 0.73 +0.4
363,472 - CA264_01530 0.75 +0.1
363,485 + CA264_01530 0.76 +0.6
363,494 - CA264_01530 0.77 +0.1
363,497 + CA264_01530 0.78 -0.9
363,498 - CA264_01530 0.78 +1.2

Or see this region's nucleotide sequence