Experiment: m.b. Vancomycin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00715 and CA264_00720 are separated by 195 nucleotides CA264_00720 and CA264_00725 are separated by 391 nucleotides CA264_00725 and CA264_00730 are separated by 2 nucleotides CA264_00730 and CA264_00735 are separated by 153 nucleotides CA264_00735 and CA264_00740 are separated by 59 nucleotides
CA264_00715: CA264_00715 - hypothetical protein, at 154,645 to 155,742
_00715
CA264_00720: CA264_00720 - 30S ribosomal protein S20, at 155,938 to 156,195
_00720
CA264_00725: CA264_00725 - pyruvate kinase, at 156,587 to 158,014
_00725
CA264_00730: CA264_00730 - hypothetical protein, at 158,017 to 158,445
_00730
CA264_00735: CA264_00735 - acyl carrier protein, at 158,599 to 158,835
_00735
CA264_00740: CA264_00740 - beta-ketoacyl-[acyl-carrier-protein] synthase II, at 158,895 to 160,148
_00740
Position (kb) 156
157
158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 155.598 kb on + strand, within CA264_00715 at 155.598 kb on + strand, within CA264_00715 at 155.598 kb on + strand, within CA264_00715 at 155.659 kb on + strand at 155.727 kb on - strand at 155.730 kb on + strand at 155.743 kb on - strand at 155.788 kb on - strand at 155.822 kb on + strand at 155.822 kb on + strand at 155.823 kb on - strand at 156.193 kb on + strand at 156.230 kb on + strand at 156.277 kb on + strand at 156.283 kb on + strand at 156.284 kb on - strand at 156.330 kb on + strand at 156.401 kb on - strand at 156.413 kb on + strand at 156.414 kb on - strand at 156.414 kb on - strand at 156.417 kb on + strand at 156.418 kb on - strand at 156.424 kb on + strand at 156.506 kb on - strand at 156.516 kb on - strand at 156.519 kb on - strand at 156.520 kb on + strand at 156.521 kb on - strand at 156.521 kb on - strand at 156.564 kb on + strand at 156.569 kb on + strand at 156.570 kb on - strand at 156.570 kb on - strand at 156.570 kb on - strand at 156.599 kb on + strand at 156.599 kb on + strand at 156.600 kb on - strand at 156.673 kb on + strand at 156.673 kb on + strand at 156.674 kb on - strand at 156.679 kb on - strand at 156.949 kb on + strand, within CA264_00725 at 156.987 kb on - strand, within CA264_00725 at 157.005 kb on - strand, within CA264_00725 at 157.257 kb on - strand, within CA264_00725 at 157.659 kb on - strand, within CA264_00725 at 157.748 kb on + strand, within CA264_00725 at 157.752 kb on - strand, within CA264_00725 at 157.920 kb on - strand at 157.973 kb on + strand at 158.014 kb on + strand at 158.015 kb on - strand at 158.018 kb on + strand at 158.019 kb on - strand at 158.037 kb on + strand at 158.068 kb on + strand, within CA264_00730 at 158.156 kb on + strand, within CA264_00730 at 158.170 kb on + strand, within CA264_00730 at 158.256 kb on + strand, within CA264_00730 at 158.256 kb on + strand, within CA264_00730 at 158.258 kb on + strand, within CA264_00730 at 158.264 kb on + strand, within CA264_00730 at 158.264 kb on + strand, within CA264_00730 at 158.417 kb on + strand at 158.417 kb on + strand at 158.463 kb on + strand at 158.468 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml remove 155,598 + CA264_00715 0.87 -2.3 155,598 + CA264_00715 0.87 -0.8 155,598 + CA264_00715 0.87 -0.1 155,659 + +0.5 155,727 - +0.1 155,730 + -1.0 155,743 - -0.5 155,788 - +0.2 155,822 + -1.3 155,822 + -0.4 155,823 - -0.0 156,193 + +0.1 156,230 + -0.2 156,277 + -1.8 156,283 + -0.8 156,284 - -0.6 156,330 + -0.7 156,401 - -0.3 156,413 + +0.1 156,414 - +2.3 156,414 - +0.6 156,417 + +0.0 156,418 - +0.6 156,424 + -0.2 156,506 - -1.5 156,516 - -0.4 156,519 - +0.2 156,520 + -0.4 156,521 - -0.1 156,521 - -0.6 156,564 + -0.4 156,569 + +0.7 156,570 - -0.3 156,570 - -0.0 156,570 - -1.3 156,599 + +0.6 156,599 + -1.1 156,600 - +3.5 156,673 + -1.1 156,673 + -0.3 156,674 - +2.6 156,679 - +0.3 156,949 + CA264_00725 0.25 -0.4 156,987 - CA264_00725 0.28 -1.6 157,005 - CA264_00725 0.29 -0.6 157,257 - CA264_00725 0.47 -2.2 157,659 - CA264_00725 0.75 +0.0 157,748 + CA264_00725 0.81 -0.2 157,752 - CA264_00725 0.82 -0.9 157,920 - -1.2 157,973 + +0.0 158,014 + -0.7 158,015 - +0.6 158,018 + +0.2 158,019 - -0.5 158,037 + -1.1 158,068 + CA264_00730 0.12 +0.0 158,156 + CA264_00730 0.32 +1.6 158,170 + CA264_00730 0.36 +0.3 158,256 + CA264_00730 0.56 +0.8 158,256 + CA264_00730 0.56 -1.4 158,258 + CA264_00730 0.56 +0.2 158,264 + CA264_00730 0.58 +1.3 158,264 + CA264_00730 0.58 +0.8 158,417 + +0.8 158,417 + -0.8 158,463 + -3.4 158,468 + -0.4
Or see this region's nucleotide sequence