Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00395

Experiment: m.b. Vancomycin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00385 and CA264_00390 are separated by 83 nucleotidesCA264_00390 and CA264_00395 overlap by 4 nucleotidesCA264_00395 and CA264_00400 are separated by 276 nucleotidesCA264_00400 and CA264_00405 are separated by 29 nucleotides CA264_00385: CA264_00385 - hypothetical protein, at 85,701 to 86,570 _00385 CA264_00390: CA264_00390 - N-acetyltransferase, at 86,654 to 87,136 _00390 CA264_00395: CA264_00395 - SAM-dependent methyltransferase, at 87,133 to 87,759 _00395 CA264_00400: CA264_00400 - alkyl hydroperoxide reductase, at 88,036 to 88,674 _00400 CA264_00405: CA264_00405 - transcriptional repressor, at 88,704 to 89,168 _00405 Position (kb) 87 88Strain fitness (log2 ratio) -2 -1 0 1 2at 86.267 kb on + strand, within CA264_00385at 86.267 kb on + strand, within CA264_00385at 86.267 kb on + strand, within CA264_00385at 86.268 kb on - strand, within CA264_00385at 86.300 kb on + strand, within CA264_00385at 86.301 kb on - strand, within CA264_00385at 86.304 kb on + strand, within CA264_00385at 86.346 kb on - strand, within CA264_00385at 86.350 kb on - strand, within CA264_00385at 86.350 kb on - strand, within CA264_00385at 86.366 kb on - strand, within CA264_00385at 86.486 kb on - strandat 86.486 kb on - strandat 86.633 kb on + strandat 86.648 kb on - strandat 86.653 kb on + strandat 86.653 kb on + strandat 86.653 kb on + strandat 86.653 kb on + strandat 86.654 kb on - strandat 86.734 kb on + strand, within CA264_00390at 86.760 kb on - strand, within CA264_00390at 86.786 kb on + strand, within CA264_00390at 86.844 kb on + strand, within CA264_00390at 86.847 kb on + strand, within CA264_00390at 86.847 kb on + strand, within CA264_00390at 86.848 kb on - strand, within CA264_00390at 86.913 kb on - strand, within CA264_00390at 86.968 kb on + strand, within CA264_00390at 86.994 kb on - strand, within CA264_00390at 87.006 kb on - strand, within CA264_00390at 87.009 kb on + strand, within CA264_00390at 87.040 kb on - strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.043 kb on + strand, within CA264_00390at 87.044 kb on - strand, within CA264_00390at 87.044 kb on - strand, within CA264_00390at 87.044 kb on - strand, within CA264_00390at 87.044 kb on - strand, within CA264_00390at 87.132 kb on + strandat 87.132 kb on + strandat 87.133 kb on - strandat 87.139 kb on - strandat 87.326 kb on + strand, within CA264_00395at 87.326 kb on + strand, within CA264_00395at 87.326 kb on + strand, within CA264_00395at 87.326 kb on + strand, within CA264_00395at 87.436 kb on + strand, within CA264_00395at 87.437 kb on - strand, within CA264_00395at 87.453 kb on + strand, within CA264_00395at 87.489 kb on + strand, within CA264_00395at 87.490 kb on - strand, within CA264_00395at 87.534 kb on - strand, within CA264_00395at 87.535 kb on + strand, within CA264_00395at 87.536 kb on - strand, within CA264_00395at 87.565 kb on + strand, within CA264_00395at 87.566 kb on - strand, within CA264_00395at 87.566 kb on - strand, within CA264_00395at 87.623 kb on - strand, within CA264_00395at 87.623 kb on - strand, within CA264_00395at 87.635 kb on + strand, within CA264_00395at 87.680 kb on + strand, within CA264_00395at 87.680 kb on + strand, within CA264_00395at 87.681 kb on - strand, within CA264_00395at 87.694 kb on + strand, within CA264_00395at 87.781 kb on + strandat 87.782 kb on - strandat 87.782 kb on - strandat 87.782 kb on - strandat 87.826 kb on - strandat 87.826 kb on - strandat 87.826 kb on - strandat 87.937 kb on - strandat 87.961 kb on - strandat 88.018 kb on + strandat 88.062 kb on - strandat 88.065 kb on + strandat 88.069 kb on + strandat 88.093 kb on - strandat 88.226 kb on - strand, within CA264_00400at 88.280 kb on - strand, within CA264_00400at 88.348 kb on - strand, within CA264_00400at 88.376 kb on + strand, within CA264_00400at 88.551 kb on - strand, within CA264_00400at 88.663 kb on + strandat 88.663 kb on + strandat 88.663 kb on + strandat 88.722 kb on - strandat 88.728 kb on + strandat 88.729 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.008 mg/ml
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86,267 + CA264_00385 0.65 -0.1
86,267 + CA264_00385 0.65 -0.8
86,267 + CA264_00385 0.65 +0.0
86,268 - CA264_00385 0.65 +0.3
86,300 + CA264_00385 0.69 -0.2
86,301 - CA264_00385 0.69 -0.7
86,304 + CA264_00385 0.69 -0.4
86,346 - CA264_00385 0.74 +0.0
86,350 - CA264_00385 0.75 -0.5
86,350 - CA264_00385 0.75 +0.0
86,366 - CA264_00385 0.76 -0.4
86,486 - +0.1
86,486 - -0.4
86,633 + -1.2
86,648 - -0.3
86,653 + +0.6
86,653 + -0.9
86,653 + -0.8
86,653 + -0.6
86,654 - -0.4
86,734 + CA264_00390 0.17 +0.4
86,760 - CA264_00390 0.22 -0.7
86,786 + CA264_00390 0.27 -0.7
86,844 + CA264_00390 0.39 +0.8
86,847 + CA264_00390 0.40 -0.0
86,847 + CA264_00390 0.40 -0.4
86,848 - CA264_00390 0.40 -0.0
86,913 - CA264_00390 0.54 +1.3
86,968 + CA264_00390 0.65 +0.8
86,994 - CA264_00390 0.70 +1.6
87,006 - CA264_00390 0.73 +1.8
87,009 + CA264_00390 0.73 -0.4
87,040 - CA264_00390 0.80 +1.4
87,043 + CA264_00390 0.81 +1.2
87,043 + CA264_00390 0.81 +0.5
87,043 + CA264_00390 0.81 -0.7
87,043 + CA264_00390 0.81 -0.1
87,043 + CA264_00390 0.81 -0.2
87,043 + CA264_00390 0.81 -0.1
87,043 + CA264_00390 0.81 -0.2
87,043 + CA264_00390 0.81 -0.1
87,043 + CA264_00390 0.81 -0.2
87,043 + CA264_00390 0.81 -0.5
87,043 + CA264_00390 0.81 -1.0
87,044 - CA264_00390 0.81 -0.3
87,044 - CA264_00390 0.81 +0.6
87,044 - CA264_00390 0.81 -0.4
87,044 - CA264_00390 0.81 -0.1
87,132 + +0.3
87,132 + -0.9
87,133 - +0.4
87,139 - +0.7
87,326 + CA264_00395 0.31 +1.1
87,326 + CA264_00395 0.31 -0.3
87,326 + CA264_00395 0.31 +0.3
87,326 + CA264_00395 0.31 -0.5
87,436 + CA264_00395 0.48 -0.4
87,437 - CA264_00395 0.48 -0.3
87,453 + CA264_00395 0.51 +1.6
87,489 + CA264_00395 0.57 +0.6
87,490 - CA264_00395 0.57 -1.7
87,534 - CA264_00395 0.64 +0.2
87,535 + CA264_00395 0.64 +0.4
87,536 - CA264_00395 0.64 +0.5
87,565 + CA264_00395 0.69 +0.3
87,566 - CA264_00395 0.69 +1.4
87,566 - CA264_00395 0.69 -0.1
87,623 - CA264_00395 0.78 -0.4
87,623 - CA264_00395 0.78 -0.5
87,635 + CA264_00395 0.80 +0.7
87,680 + CA264_00395 0.87 +0.0
87,680 + CA264_00395 0.87 -0.5
87,681 - CA264_00395 0.87 +1.0
87,694 + CA264_00395 0.89 +0.3
87,781 + -0.3
87,782 - -0.7
87,782 - +0.9
87,782 - +0.0
87,826 - -0.2
87,826 - +1.1
87,826 - +0.6
87,937 - +1.6
87,961 - +0.1
88,018 + +0.2
88,062 - +0.1
88,065 + -1.1
88,069 + +0.9
88,093 - -0.3
88,226 - CA264_00400 0.30 +1.4
88,280 - CA264_00400 0.38 +0.2
88,348 - CA264_00400 0.49 -0.8
88,376 + CA264_00400 0.53 -0.8
88,551 - CA264_00400 0.81 +0.6
88,663 + -2.7
88,663 + -1.3
88,663 + -0.3
88,722 - +1.0
88,728 + -0.3
88,729 - +0.2

Or see this region's nucleotide sequence