Strain Fitness in Escherichia coli BW25113 around b2836

Experiment: Time0_Wash=PBS; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Time0_Wash=PBS; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB
2,970,900	-	ygeD	b2835	0.18	-1.4
2,970,970	-	ygeD	b2835	0.23	-0.9
2,971,028	+	ygeD	b2835	0.28	-1.4
2,971,028	+	ygeD	b2835	0.28	-0.7
2,971,031	-	ygeD	b2835	0.28	-0.3
2,971,031	-	ygeD	b2835	0.28	-0.1
2,971,033	-	ygeD	b2835	0.29	-1.1
2,971,068	-	ygeD	b2835	0.32	-0.9
2,971,154	-	ygeD	b2835	0.39	-1.1
2,971,180	+	ygeD	b2835	0.41	-1.6
2,971,303	-	ygeD	b2835	0.51	-2.7
2,971,305	+	ygeD	b2835	0.51	-1.2
2,971,360	+	ygeD	b2835	0.56	-0.9
2,971,360	+	ygeD	b2835	0.56	-1.8
2,971,438	-	ygeD	b2835	0.63	-1.4
2,971,489	+	ygeD	b2835	0.67	-1.7
2,971,489	+	ygeD	b2835	0.67	+0.5
2,971,489	+	ygeD	b2835	0.67	-1.0
2,971,571	-	ygeD	b2835	0.74	-1.4
2,971,581	+	ygeD	b2835	0.75	-2.4
2,971,617	+	ygeD	b2835	0.78	-0.9
2,971,625	-	ygeD	b2835	0.78	-2.6
2,971,625	-	ygeD	b2835	0.78	-1.4
2,971,634	+	ygeD	b2835	0.79	-1.9
2,971,656	-	ygeD	b2835	0.81	-2.4
2,971,656	-	ygeD	b2835	0.81	-2.3
2,971,737	-	ygeD	b2835	0.88	-1.4
2,971,737	-	ygeD	b2835	0.88	-1.2
2,971,753	-	ygeD	b2835	0.89	-1.3
2,971,776	-				-1.1
2,971,857	+				-1.5
2,971,864	+				-1.0
2,971,869	+				-1.0
2,971,869	+				-1.0
2,971,970	+				-1.2
2,972,106	-	aas	b2836	0.11	-0.6
2,972,202	-	aas	b2836	0.15	-1.8
2,972,210	+	aas	b2836	0.15	-2.3
2,972,215	+	aas	b2836	0.16	-3.5
2,972,215	+	aas	b2836	0.16	-1.3
2,972,239	+	aas	b2836	0.17	-1.6
2,972,261	-	aas	b2836	0.18	-0.6
2,972,261	-	aas	b2836	0.18	-0.9
2,972,467	+	aas	b2836	0.27	-2.2
2,972,498	-	aas	b2836	0.29	-2.0
2,972,589	-	aas	b2836	0.33	-1.8
2,972,629	+	aas	b2836	0.35	-1.8
2,972,660	-	aas	b2836	0.36	-1.2
2,972,660	-	aas	b2836	0.36	-0.8
2,972,667	+	aas	b2836	0.37	-2.5
2,972,668	-	aas	b2836	0.37	-1.8
2,972,750	-	aas	b2836	0.40	-0.6
2,972,750	-	aas	b2836	0.40	-0.1
2,972,752	-	aas	b2836	0.41	-0.7
2,972,752	-	aas	b2836	0.41	-0.2
2,972,776	+	aas	b2836	0.42	-1.6
2,972,789	+	aas	b2836	0.42	-1.4
2,972,887	-	aas	b2836	0.47	-0.2
2,972,905	+	aas	b2836	0.48	+0.0
2,972,952	+	aas	b2836	0.50	-1.9
2,973,147	+	aas	b2836	0.59	-1.5
2,973,200	-	aas	b2836	0.61	-2.4
2,973,253	+	aas	b2836	0.64	-1.4
2,973,261	-	aas	b2836	0.64	-0.6
2,973,261	-	aas	b2836	0.64	-0.6
2,973,351	+	aas	b2836	0.68	-1.2
2,973,351	+	aas	b2836	0.68	-0.8
2,973,354	-	aas	b2836	0.68	-3.4
2,973,354	-	aas	b2836	0.68	-1.4
2,973,526	-	aas	b2836	0.76	-3.1
2,973,540	-	aas	b2836	0.77	-2.6
2,973,699	-	aas	b2836	0.84	-1.1
2,973,741	+	aas	b2836	0.86	-1.6
2,973,754	+	aas	b2836	0.87	+0.3
2,973,831	-				-1.3
2,973,831	-				-1.8
2,973,842	-				-1.7
2,973,894	-				-1.6
2,973,916	+				-0.9
2,973,918	+				-1.4
2,973,974	-				-0.3
2,973,995	+				-1.2
2,974,053	-				-0.3
2,974,055	+				-0.4
2,974,055	+				-1.9
2,974,090	+				-0.9
2,974,090	+				-2.6
2,974,097	-				+0.5
2,974,148	+	rygA	b4444	0.27	+0.1
2,974,161	-	rygA	b4444	0.42	+0.7
2,974,163	-	rygA	b4444	0.44	-0.3
2,974,163	-	rygA	b4444	0.44	+0.1
2,974,168	-	rygA	b4444	0.50	+0.1
2,974,174	-	rygA	b4444	0.57	+0.5
2,974,183	-	rygA	b4444	0.67	-1.3
2,974,340	+	omrB	b4445	0.17	+0.3
2,974,353	-	omrB	b4445	0.33	-0.6
2,974,363	-	omrB	b4445	0.45	+0.1
2,974,381	-	omrB	b4445	0.67	+0.0
2,974,429	-				-0.0
2,974,581	-				-0.7
2,974,635	+				+0.1
2,974,635	+				+0.4
2,974,636	-				-0.3
2,974,636	-				+1.3
2,974,684	+				-1.1
2,974,684	+				+0.2
2,974,723	+				+0.1
2,974,733	+	galR	b2837	0.11	-2.3
2,974,733	+	galR	b2837	0.11	-3.8
2,974,741	-	galR	b2837	0.12	+0.1
2,974,741	-	galR	b2837	0.12	-1.9
2,974,751	+	galR	b2837	0.13	+0.1
2,974,793	+	galR	b2837	0.17	-0.1
2,974,793	+	galR	b2837	0.17	-1.2