Strain Fitness in Escherichia coli BW25113 around b2703
Experiment: Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB |
---|---|---|---|---|---|
remove | |||||
2,823,486 | - | mltB | b2701 | 0.90 | -0.7 |
2,823,486 | - | mltB | b2701 | 0.90 | -0.8 |
2,823,519 | - | +1.3 | |||
2,823,519 | - | -0.0 | |||
2,823,633 | + | -2.9 | |||
2,823,673 | - | -1.5 | |||
2,823,673 | - | +0.7 | |||
2,823,689 | - | -1.4 | |||
2,823,807 | - | +0.3 | |||
2,823,849 | + | -0.3 | |||
2,823,872 | - | -0.3 | |||
2,823,876 | + | -1.7 | |||
2,823,939 | + | srlA | b2702 | 0.15 | -4.3 |
2,823,939 | + | srlA | b2702 | 0.15 | -0.4 |
2,823,970 | - | srlA | b2702 | 0.21 | +0.0 |
2,823,976 | - | srlA | b2702 | 0.22 | -0.4 |
2,824,104 | + | srlA | b2702 | 0.44 | -0.0 |
2,824,104 | + | srlA | b2702 | 0.44 | -0.5 |
2,824,117 | - | srlA | b2702 | 0.47 | -1.9 |
2,824,196 | + | srlA | b2702 | 0.61 | +0.5 |
2,824,229 | - | srlA | b2702 | 0.66 | +1.5 |
2,824,229 | - | srlA | b2702 | 0.66 | -1.4 |
2,824,287 | + | srlA | b2702 | 0.77 | -2.6 |
2,824,287 | + | srlA | b2702 | 0.77 | +0.3 |
2,824,300 | - | srlA | b2702 | 0.79 | -1.1 |
2,824,412 | - | -2.0 | |||
2,824,412 | - | -2.9 | |||
2,824,460 | + | +0.6 | |||
2,824,683 | - | srlE | b2703 | 0.28 | +0.6 |
2,824,736 | - | srlE | b2703 | 0.34 | +0.3 |
2,824,775 | + | srlE | b2703 | 0.38 | +0.5 |
2,824,933 | - | srlE | b2703 | 0.54 | +3.0 |
2,824,938 | - | srlE | b2703 | 0.55 | +4.7 |
2,824,938 | - | srlE | b2703 | 0.55 | -2.0 |
2,824,969 | + | srlE | b2703 | 0.58 | -0.0 |
2,824,969 | + | srlE | b2703 | 0.58 | +3.9 |
2,824,983 | + | srlE | b2703 | 0.59 | -0.1 |
2,824,983 | + | srlE | b2703 | 0.59 | -2.4 |
2,825,009 | + | srlE | b2703 | 0.62 | -0.4 |
2,825,113 | - | srlE | b2703 | 0.73 | +1.0 |
2,825,179 | + | srlE | b2703 | 0.80 | -0.2 |
2,825,263 | + | srlE | b2703 | 0.88 | +0.3 |
2,825,263 | + | srlE | b2703 | 0.88 | +3.5 |
2,825,296 | + | +0.1 | |||
2,825,569 | + | srlB | b2704 | 0.50 | +0.6 |
2,825,599 | - | srlB | b2704 | 0.58 | +3.7 |
2,825,631 | + | srlB | b2704 | 0.66 | -1.9 |
2,825,631 | + | srlB | b2704 | 0.66 | -1.1 |
2,825,641 | + | srlB | b2704 | 0.69 | +2.2 |
2,825,689 | - | srlB | b2704 | 0.82 | +0.7 |
2,825,709 | + | srlB | b2704 | 0.87 | +1.4 |
2,825,734 | + | -3.3 | |||
2,825,807 | + | -0.0 | |||
2,825,921 | - | srlD | b2705 | 0.21 | -0.5 |
2,825,949 | - | srlD | b2705 | 0.24 | -0.7 |
2,825,949 | - | srlD | b2705 | 0.24 | -3.4 |
2,825,973 | + | srlD | b2705 | 0.27 | -1.4 |
2,826,044 | - | srlD | b2705 | 0.37 | -0.4 |
2,826,210 | + | srlD | b2705 | 0.58 | -1.0 |
2,826,210 | + | srlD | b2705 | 0.58 | -0.0 |
2,826,215 | + | srlD | b2705 | 0.58 | -0.1 |
2,826,218 | - | srlD | b2705 | 0.59 | +1.2 |
2,826,218 | - | srlD | b2705 | 0.59 | -0.0 |
2,826,245 | + | srlD | b2705 | 0.62 | -3.2 |
2,826,318 | - | srlD | b2705 | 0.72 | -0.6 |
Or see this region's nucleotide sequence