Strain Fitness in Escherichia coli BW25113 around b4409

Experiment: Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB
1,701,612	-	b1624	b1624	0.31	-0.3
1,701,697	+	b1624	b1624	0.39	-0.7
1,701,798	+	b1624	b1624	0.49	-2.1
1,701,798	+	b1624	b1624	0.49	-2.5
1,701,813	-	b1624	b1624	0.50	+1.7
1,701,813	-	b1624	b1624	0.50	-0.2
1,701,886	-	b1624	b1624	0.57	-1.1
1,701,923	+	b1624	b1624	0.61	-3.0
1,701,972	-	b1624	b1624	0.65	-1.6
1,701,988	+	b1624	b1624	0.67	-0.6
1,701,988	+	b1624	b1624	0.67	+0.6
1,702,175	-	b1624	b1624	0.85	-0.1
1,702,296	-				+1.1
1,702,375	+				+1.7
1,702,382	-				+2.1
1,702,402	-				+2.1
1,702,402	-				+2.1
1,702,418	-				+2.1
1,702,423	+				-3.0
1,702,425	+				+0.7
1,702,425	+				+0.9
1,702,541	-				+1.7
1,702,546	-				+1.1
1,702,553	+				+0.4
1,702,553	+				-0.3
1,702,560	-				+2.1
1,702,560	-				+0.5
1,702,565	-				+2.1
1,702,569	+				-1.3
1,702,569	-				+4.6
1,702,569	-				+0.1
1,702,572	+				+2.0
1,702,626	+	blr	b4409	0.40	-0.4
1,702,634	-	blr	b4409	0.47	+2.1
1,702,638	-	blr	b4409	0.50	+2.1
1,702,648	+	blr	b4409	0.58	-0.7
1,702,651	-	blr	b4409	0.60	-0.8
1,702,657	+	blr	b4409	0.65	-0.1
1,702,658	-	blr	b4409	0.66	+1.1
1,702,661	+	blr	b4409	0.68	-0.4
1,702,666	+	blr	b4409	0.72	-1.0
1,702,671	+	blr	b4409	0.76	-1.6
1,702,671	+	blr	b4409	0.76	+0.2
1,702,673	+	blr	b4409	0.78	-2.3
1,702,679	-	blr	b4409	0.83	+2.1
1,702,694	+				-1.4
1,702,694	-				+2.1
1,702,715	+				-1.4
1,702,725	+				-4.5
1,702,725	+				-1.3
1,702,725	+				+0.1
1,702,812	+				-0.9
1,702,812	+				+1.1
1,702,821	+				+1.2
1,702,979	+				-2.1
1,702,984	+				+3.8
1,702,984	+				+1.1
1,702,987	-				-3.1
1,702,987	-				+0.4
1,702,987	-				+1.7
1,702,990	-				-2.1
1,702,992	-				+1.2
1,703,033	-	ydgT	b1625	0.28	-1.4
1,703,052	+	ydgT	b1625	0.37	-1.4
1,703,054	-	ydgT	b1625	0.38	+1.6
1,703,054	-	ydgT	b1625	0.38	-0.3
1,703,055	+	ydgT	b1625	0.38	-2.8
1,703,070	+	ydgT	b1625	0.45	+3.1
1,703,070	+	ydgT	b1625	0.45	+0.3
1,703,070	+	ydgT	b1625	0.45	+3.7
1,703,070	+	ydgT	b1625	0.45	+0.8
1,703,070	+	ydgT	b1625	0.45	+1.0
1,703,078	-	ydgT	b1625	0.49	-0.9
1,703,078	-	ydgT	b1625	0.49	-2.6
1,703,081	+	ydgT	b1625	0.50	+0.9
1,703,084	+	ydgT	b1625	0.51	-0.9
1,703,089	+	ydgT	b1625	0.54	-0.9
1,703,092	-	ydgT	b1625	0.55	-0.8
1,703,102	-	ydgT	b1625	0.60	+0.1
1,703,105	-	ydgT	b1625	0.61	+0.1
1,703,109	+	ydgT	b1625	0.63	-2.5
1,703,109	+	ydgT	b1625	0.63	+0.2
1,703,142	-	ydgT	b1625	0.78	+0.0
1,703,153	-	ydgT	b1625	0.83	+1.7
1,703,178	+				-1.4
1,703,210	-				-0.2
1,703,263	-				-1.9
1,703,268	-				+1.1
1,703,276	+				+0.9
1,703,278	-				+0.6
1,703,296	+				+0.1
1,703,296	+				-2.1
1,703,368	-	b1626	b1626	0.21	+1.3
1,703,368	-	b1626	b1626	0.21	+0.1
1,703,369	+	b1626	b1626	0.22	+0.4
1,703,377	-	b1626	b1626	0.23	-0.9
1,703,377	-	b1626	b1626	0.23	+1.3
1,703,377	-	b1626	b1626	0.23	-2.6
1,703,380	-	b1626	b1626	0.24	+2.6
1,703,380	-	b1626	b1626	0.24	+2.2
1,703,424	+	b1626	b1626	0.34	-0.4
1,703,427	-	b1626	b1626	0.35	-2.1
1,703,427	-	b1626	b1626	0.35	-0.9
1,703,480	+	b1626	b1626	0.47	+1.1
1,703,495	+	b1626	b1626	0.50	-2.2
1,703,503	-	b1626	b1626	0.52	-0.0
1,703,518	-	b1626	b1626	0.55	-1.5
1,703,518	-	b1626	b1626	0.55	-0.8
1,703,527	+	b1626	b1626	0.57	-0.1
1,703,537	+	b1626	b1626	0.60	-0.6
1,703,542	+	b1626	b1626	0.61	-1.1
1,703,542	+	b1626	b1626	0.61	+0.9
1,703,549	-	b1626	b1626	0.62	-0.8
1,703,609	+	b1626	b1626	0.76	+0.7
1,703,617	-	b1626	b1626	0.78	+2.5
1,703,670	+	b1626	b1626	0.90	+0.9
1,703,671	-				-2.6
1,703,671	-				-2.5