Strain Fitness in Escherichia coli BW25113 around b2981

Experiment: Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntglcC and yghO are separated by 6 nucleotidesyghO and insH-9 are separated by 34 nucleotides b2980: glcC - DNA-binding transcriptional dual regulator, glycolate-binding (NCBI), at 3,126,294 to 3,127,058 glcC b2981: yghO - predicted DNA-binding transcriptional regulator (RefSeq), at 3,127,065 to 3,128,165 yghO b2982: insH-9 - IS5 transposase and trans-activator (NCBI), at 3,128,200 to 3,129,216 insH-9 Position (kb) 3127 3128 3129Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3126.066 kb on - strandat 3126.280 kb on - strandat 3126.282 kb on - strandat 3126.282 kb on - strandat 3126.345 kb on - strandat 3126.396 kb on - strand, within glcCat 3126.427 kb on + strand, within glcCat 3126.510 kb on + strand, within glcCat 3126.598 kb on + strand, within glcCat 3126.626 kb on + strand, within glcCat 3126.740 kb on - strand, within glcCat 3126.753 kb on - strand, within glcCat 3126.865 kb on - strand, within glcCat 3126.889 kb on + strand, within glcCat 3126.926 kb on - strand, within glcCat 3127.086 kb on - strandat 3127.101 kb on - strandat 3127.148 kb on - strandat 3127.169 kb on - strandat 3127.169 kb on - strandat 3127.234 kb on - strand, within yghOat 3127.274 kb on - strand, within yghOat 3127.274 kb on - strand, within yghOat 3127.435 kb on + strand, within yghOat 3127.566 kb on + strand, within yghOat 3127.566 kb on + strand, within yghOat 3127.607 kb on + strand, within yghOat 3127.697 kb on - strand, within yghOat 3127.762 kb on - strand, within yghOat 3127.762 kb on - strand, within yghOat 3127.762 kb on - strand, within yghOat 3127.764 kb on + strand, within yghOat 3127.772 kb on - strand, within yghOat 3127.846 kb on - strand, within yghOat 3127.909 kb on - strand, within yghOat 3127.909 kb on - strand, within yghOat 3127.966 kb on + strand, within yghOat 3128.034 kb on + strand, within yghOat 3128.034 kb on + strand, within yghOat 3128.034 kb on + strand, within yghO

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB
remove
3,126,066 - -3.0
3,126,280 - -0.2
3,126,282 - +0.8
3,126,282 - -4.5
3,126,345 - +1.7
3,126,396 - glcC b2980 0.13 +0.7
3,126,427 + glcC b2980 0.17 +1.7
3,126,510 + glcC b2980 0.28 -0.9
3,126,598 + glcC b2980 0.40 -1.4
3,126,626 + glcC b2980 0.43 -0.6
3,126,740 - glcC b2980 0.58 +0.6
3,126,753 - glcC b2980 0.60 -0.3
3,126,865 - glcC b2980 0.75 +2.0
3,126,889 + glcC b2980 0.78 -4.5
3,126,926 - glcC b2980 0.83 -2.0
3,127,086 - +0.0
3,127,101 - -1.5
3,127,148 - +1.1
3,127,169 - -5.0
3,127,169 - -0.4
3,127,234 - yghO b2981 0.15 -1.4
3,127,274 - yghO b2981 0.19 -4.2
3,127,274 - yghO b2981 0.19 -0.1
3,127,435 + yghO b2981 0.34 +0.0
3,127,566 + yghO b2981 0.46 -3.4
3,127,566 + yghO b2981 0.46 -1.8
3,127,607 + yghO b2981 0.49 -1.6
3,127,697 - yghO b2981 0.57 +0.0
3,127,762 - yghO b2981 0.63 -5.6
3,127,762 - yghO b2981 0.63 +1.8
3,127,762 - yghO b2981 0.63 +1.7
3,127,764 + yghO b2981 0.63 -1.5
3,127,772 - yghO b2981 0.64 -0.5
3,127,846 - yghO b2981 0.71 +0.2
3,127,909 - yghO b2981 0.77 -4.4
3,127,909 - yghO b2981 0.77 +0.4
3,127,966 + yghO b2981 0.82 -0.2
3,128,034 + yghO b2981 0.88 -0.1
3,128,034 + yghO b2981 0.88 +0.0
3,128,034 + yghO b2981 0.88 +0.1

Or see this region's nucleotide sequence