Strain Fitness in Escherichia coli BW25113 around b2887

Experiment: Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB
3,026,052	+	ygfQ	b4464	0.66	-0.7
3,026,088	+	ygfQ	b4464	0.69	+0.1
3,026,137	+	ygfQ	b4464	0.73	+1.9
3,026,137	+	ygfQ	b4464	0.73	-4.5
3,026,261	-				-1.2
3,026,261	-	ygfQ	b4464	0.82	-2.9
3,026,263	+	ygfQ	b4464	0.82	-0.1
3,026,321	+	ygfQ	b4464	0.86	+2.4
3,026,321	+	ygfQ	b4464	0.86	-0.8
3,026,331	+	ygfQ	b4464	0.87	+0.1
3,026,363	-	ygfQ	b4464	0.89	-0.1
3,026,414	-				-2.2
3,026,467	-				-3.2
3,026,623	+	ygfS	b2886	0.16	+0.2
3,026,641	+	ygfS	b2886	0.19	-1.0
3,026,662	+	ygfS	b2886	0.24	+0.9
3,026,705	+	ygfS	b2886	0.33	-1.9
3,026,723	-	ygfS	b2886	0.36	+0.5
3,026,800	-	ygfS	b2886	0.52	-2.9
3,026,800	-	ygfS	b2886	0.52	-0.9
3,026,812	-	ygfS	b2886	0.54	-1.0
3,026,853	+	ygfS	b2886	0.63	-1.1
3,026,947	+	ygfS	b2886	0.82	-3.5
3,026,947	+	ygfS	b2886	0.82	+0.4
3,027,136	-				-0.7
3,027,136	-				-0.3
3,027,184	-				-0.4
3,027,255	-	ygfT	b2887	0.12	+0.2
3,027,255	-	ygfT	b2887	0.12	+0.7
3,027,337	+	ygfT	b2887	0.16	+0.7
3,027,370	-	ygfT	b2887	0.17	+0.3
3,027,380	-	ygfT	b2887	0.18	-0.5
3,027,407	+	ygfT	b2887	0.19	+0.1
3,027,466	-	ygfT	b2887	0.23	-2.4
3,027,566	+	ygfT	b2887	0.28	-3.3
3,027,574	-	ygfT	b2887	0.28	+1.0
3,027,574	-	ygfT	b2887	0.28	-3.1
3,027,635	-	ygfT	b2887	0.31	-4.7
3,027,658	+	ygfT	b2887	0.33	+0.1
3,027,676	-	ygfT	b2887	0.33	-0.6
3,027,676	-	ygfT	b2887	0.33	-3.8
3,027,687	+	ygfT	b2887	0.34	-2.6
3,027,690	-	ygfT	b2887	0.34	-0.4
3,027,720	-	ygfT	b2887	0.36	-0.7
3,027,759	-	ygfT	b2887	0.38	-0.1
3,027,870	-	ygfT	b2887	0.44	-1.7
3,027,870	-	ygfT	b2887	0.44	-2.6
3,027,929	-	ygfT	b2887	0.47	+0.7
3,027,990	-	ygfT	b2887	0.50	+1.1
3,027,990	-	ygfT	b2887	0.50	-4.9
3,027,990	-	ygfT	b2887	0.50	+0.7
3,028,082	+	ygfT	b2887	0.55	+0.6
3,028,090	-	ygfT	b2887	0.55	+0.7
3,028,111	-	ygfT	b2887	0.56	-0.8
3,028,111	-	ygfT	b2887	0.56	-3.0
3,028,136	-	ygfT	b2887	0.57	-0.1
3,028,167	+	ygfT	b2887	0.59	+0.6
3,028,167	+	ygfT	b2887	0.59	-0.3
3,028,240	+	ygfT	b2887	0.63	-2.7
3,028,288	+	ygfT	b2887	0.65	-0.4
3,028,351	+	ygfT	b2887	0.69	+0.0
3,028,381	+	ygfT	b2887	0.70	+0.5
3,028,381	+	ygfT	b2887	0.70	+1.6
3,028,454	+	ygfT	b2887	0.74	-0.2
3,028,556	-	ygfT	b2887	0.79	+0.5
3,028,598	-	ygfT	b2887	0.81	+0.3
3,028,634	+	ygfT	b2887	0.83	-3.6
3,028,718	+	ygfT	b2887	0.88	+0.4
3,028,815	+				+0.9
3,028,816	+				+0.2
3,028,823	+				-1.9
3,028,823	+				-2.5
3,028,836	+				-1.8
3,028,836	+				-1.7
3,028,885	+				-1.2
3,028,896	+				-0.6
3,028,896	+				-1.8
3,028,911	+				-0.8
3,028,911	+				+1.3
3,028,911	+				+2.0
3,028,920	-				-0.1
3,028,921	-				+0.6
3,028,921	-				-0.8
3,028,966	+				-3.1
3,028,984	+				-0.4
3,028,984	+				-0.4
3,028,986	+				-2.4
3,029,016	+				-0.1
3,029,016	+				+2.2
3,029,016	+				+2.2
3,029,116	-				-1.3
3,029,165	-				-2.9
3,029,165	-				+0.2
3,029,170	-				+0.9
3,029,220	-				+1.4
3,029,250	-				+1.9
3,029,250	-				-0.1
3,029,250	-				-2.9
3,029,251	+				-2.2
3,029,252	-				+1.7
3,029,252	-				+3.0
3,029,285	-				-0.5
3,029,287	-				+0.0
3,029,310	+				+0.5
3,029,310	+				+0.4
3,029,318	-				-0.4
3,029,359	-				-4.3
3,029,359	-				-3.7
3,029,363	-				+0.9
3,029,366	+				-2.2
3,029,383	+				-0.9
3,029,383	+				-2.9
3,029,394	-				-1.4
3,029,425	+				-2.3
3,029,468	-				+2.1
3,029,491	+				-1.1
3,029,491	+				+0.9
3,029,527	-				+1.6
3,029,553	+	ygfU	b2888	0.11	-0.7
3,029,553	+	ygfU	b2888	0.11	+0.8
3,029,564	+	ygfU	b2888	0.12	-1.4
3,029,564	+	ygfU	b2888	0.12	-1.5
3,029,607	+	ygfU	b2888	0.15	+0.2
3,029,648	+	ygfU	b2888	0.18	-2.4
3,029,657	-	ygfU	b2888	0.18	+0.4
3,029,679	-	ygfU	b2888	0.20	+0.5
3,029,704	-	ygfU	b2888	0.22	-2.9
3,029,714	+	ygfU	b2888	0.22	-1.3
3,029,716	+	ygfU	b2888	0.23	-0.7
3,029,720	+	ygfU	b2888	0.23	+1.4
3,029,720	+	ygfU	b2888	0.23	+0.7
3,029,764	-	ygfU	b2888	0.26	-1.7
3,029,791	-	ygfU	b2888	0.28	-2.5
3,029,808	-	ygfU	b2888	0.29	+0.6
3,029,808	-	ygfU	b2888	0.29	+1.5
3,029,817	+	ygfU	b2888	0.30	+3.2
3,029,833	+	ygfU	b2888	0.31	+0.1
3,029,873	-	ygfU	b2888	0.33	+0.8
3,029,875	+	ygfU	b2888	0.34	+1.0
3,029,878	-	ygfU	b2888	0.34	+1.3
3,029,878	-	ygfU	b2888	0.34	-0.5
3,029,878	-	ygfU	b2888	0.34	-0.2
3,029,880	+	ygfU	b2888	0.34	-1.0
3,029,881	-	ygfU	b2888	0.34	+0.5
3,029,885	+	ygfU	b2888	0.34	+0.9
3,029,888	-	ygfU	b2888	0.34	-1.6
3,029,888	-	ygfU	b2888	0.34	-2.8
3,029,892	-	ygfU	b2888	0.35	-1.4
3,029,895	+	ygfU	b2888	0.35	-0.5
3,029,913	-	ygfU	b2888	0.36	+2.2
3,029,925	+	ygfU	b2888	0.37	-0.7
3,029,925	+	ygfU	b2888	0.37	-1.9