Strain Fitness in Escherichia coli BW25113 around b2532
Experiment: Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB |
|---|---|---|---|---|---|
| remove | |||||
| 2,659,636 | - | -1.0 | |||
| 2,659,636 | - | +2.4 | |||
| 2,659,684 | - | +1.2 | |||
| 2,659,834 | - | iscR | b2531 | 0.35 | -0.3 |
| 2,659,875 | - | iscR | b2531 | 0.43 | +0.3 |
| 2,659,897 | - | iscR | b2531 | 0.47 | -1.3 |
| 2,660,133 | - | -2.0 | |||
| 2,660,376 | + | +0.0 | |||
| 2,660,376 | + | -0.2 | |||
| 2,660,376 | + | +1.2 | |||
| 2,660,376 | + | -0.2 | |||
| 2,660,475 | - | +1.2 | |||
| 2,660,558 | + | -4.2 | |||
| 2,661,004 | + | yfhQ | b2532 | 0.54 | -0.8 |
| 2,661,004 | + | yfhQ | b2532 | 0.54 | +0.3 |
| 2,661,012 | - | yfhQ | b2532 | 0.55 | +1.1 |
| 2,661,023 | - | yfhQ | b2532 | 0.56 | -2.5 |
| 2,661,088 | - | yfhQ | b2532 | 0.65 | -0.1 |
| 2,661,196 | + | yfhQ | b2532 | 0.80 | +3.5 |
| 2,661,215 | + | yfhQ | b2532 | 0.82 | +2.0 |
| 2,661,242 | + | yfhQ | b2532 | 0.86 | +0.4 |
| 2,661,242 | + | yfhQ | b2532 | 0.86 | +2.1 |
| 2,661,287 | - | -0.4 | |||
| 2,661,394 | + | -0.6 |
Or see this region's nucleotide sequence