Experiment: Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfbG and yfbH overlap by 4 nucleotides yfbH and arnT overlap by 1 nucleotides arnT and yfbW overlap by 4 nucleotides yfbW and b2258 overlap by 1 nucleotides b2258 and pmrD overlap by 7 nucleotides
b2255: yfbG - hypothetical protein (NCBI), at 2,366,061 to 2,368,043
yfbG
b2256: yfbH - hypothetical protein (NCBI), at 2,368,040 to 2,368,930
yfbH
b2257: arnT - 4-amino-4-deoxy-L-arabinose transferase (NCBI), at 2,368,930 to 2,370,582
arnT
b4544: yfbW - hypothetical protein (NCBI), at 2,370,579 to 2,370,914
yfbW
b2258: b2258 - putative transport/receptor protein (VIMSS), at 2,370,914 to 2,371,300
b2258
b2259: pmrD - polymyxin resistance protein B (VIMSS), at 2,371,294 to 2,371,560
pmrD
Position (kb)
2368
2369
2370
2371 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2367.936 kb on + strand at 2368.161 kb on + strand, within yfbH at 2368.161 kb on + strand, within yfbH at 2368.165 kb on + strand, within yfbH at 2368.165 kb on + strand, within yfbH at 2368.358 kb on + strand, within yfbH at 2368.453 kb on - strand, within yfbH at 2368.600 kb on + strand, within yfbH at 2368.608 kb on - strand, within yfbH at 2368.633 kb on + strand, within yfbH at 2368.633 kb on + strand, within yfbH at 2368.668 kb on - strand, within yfbH at 2368.691 kb on + strand, within yfbH at 2368.796 kb on + strand, within yfbH at 2368.805 kb on + strand, within yfbH at 2368.834 kb on + strand, within yfbH at 2368.857 kb on + strand at 2368.892 kb on + strand at 2368.923 kb on + strand at 2368.990 kb on - strand at 2369.236 kb on - strand, within arnT at 2369.265 kb on - strand, within arnT at 2369.327 kb on + strand, within arnT at 2369.327 kb on + strand, within arnT at 2369.668 kb on + strand, within arnT at 2369.668 kb on + strand, within arnT at 2369.742 kb on + strand, within arnT at 2369.762 kb on - strand, within arnT at 2369.762 kb on - strand, within arnT at 2369.881 kb on - strand, within arnT at 2370.286 kb on - strand, within arnT at 2370.294 kb on - strand, within arnT at 2370.308 kb on + strand, within arnT at 2370.308 kb on + strand, within arnT at 2370.326 kb on - strand, within arnT at 2370.493 kb on + strand at 2370.551 kb on + strand at 2370.608 kb on - strand at 2370.715 kb on + strand, within yfbW at 2370.722 kb on - strand, within yfbW at 2370.723 kb on - strand, within yfbW at 2370.723 kb on - strand, within yfbW at 2370.747 kb on + strand, within yfbW at 2370.747 kb on + strand, within yfbW at 2370.909 kb on + strand at 2370.909 kb on - strand at 2370.911 kb on + strand at 2371.053 kb on + strand, within b2258 at 2371.397 kb on - strand, within pmrD at 2371.562 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB remove 2,367,936 + -1.4 2,368,161 + yfbH b2256 0.14 -2.1 2,368,161 + yfbH b2256 0.14 +0.5 2,368,165 + yfbH b2256 0.14 +0.7 2,368,165 + yfbH b2256 0.14 -0.4 2,368,358 + yfbH b2256 0.36 -2.3 2,368,453 - yfbH b2256 0.46 -0.9 2,368,600 + yfbH b2256 0.63 +1.8 2,368,608 - yfbH b2256 0.64 +1.6 2,368,633 + yfbH b2256 0.67 +0.2 2,368,633 + yfbH b2256 0.67 +1.8 2,368,668 - yfbH b2256 0.70 +1.0 2,368,691 + yfbH b2256 0.73 -0.2 2,368,796 + yfbH b2256 0.85 +1.5 2,368,805 + yfbH b2256 0.86 +1.8 2,368,834 + yfbH b2256 0.89 -0.3 2,368,857 + +1.5 2,368,892 + -0.1 2,368,923 + -1.3 2,368,990 - -0.7 2,369,236 - arnT b2257 0.19 +1.2 2,369,265 - arnT b2257 0.20 -2.0 2,369,327 + arnT b2257 0.24 +0.9 2,369,327 + arnT b2257 0.24 -4.1 2,369,668 + arnT b2257 0.45 +1.0 2,369,668 + arnT b2257 0.45 +0.6 2,369,742 + arnT b2257 0.49 -1.2 2,369,762 - arnT b2257 0.50 -3.1 2,369,762 - arnT b2257 0.50 +1.7 2,369,881 - arnT b2257 0.58 +0.7 2,370,286 - arnT b2257 0.82 +2.7 2,370,294 - arnT b2257 0.83 -2.5 2,370,308 + arnT b2257 0.83 +2.2 2,370,308 + arnT b2257 0.83 +3.6 2,370,326 - arnT b2257 0.84 +0.2 2,370,493 + -0.3 2,370,551 + +0.3 2,370,608 - +0.7 2,370,715 + yfbW b4544 0.40 +0.4 2,370,722 - yfbW b4544 0.43 -3.2 2,370,723 - yfbW b4544 0.43 +0.8 2,370,723 - yfbW b4544 0.43 +3.4 2,370,747 + yfbW b4544 0.50 -0.7 2,370,747 + yfbW b4544 0.50 -3.2 2,370,909 + -1.3 2,370,909 - -0.9 2,370,911 + +0.9 2,371,053 + b2258 b2258 0.36 -0.1 2,371,397 - pmrD b2259 0.39 +0.8 2,371,562 - +0.1
Or see this region's nucleotide sequence