Strain Fitness in Escherichia coli BW25113 around b1883
Experiment: Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB |
---|---|---|---|---|---|
remove | |||||
1,964,507 | - | cheZ | b1881 | 0.14 | +2.2 |
1,964,609 | - | cheZ | b1881 | 0.30 | +1.2 |
1,964,847 | - | cheZ | b1881 | 0.67 | -0.7 |
1,964,889 | + | cheZ | b1881 | 0.73 | -0.7 |
1,965,270 | + | cheY | b1882 | 0.51 | -0.3 |
1,965,696 | - | cheB | b1883 | 0.21 | +0.1 |
1,965,815 | - | cheB | b1883 | 0.32 | -2.1 |
1,966,252 | + | cheB | b1883 | 0.74 | -3.8 |
1,966,273 | + | cheB | b1883 | 0.76 | -1.7 |
1,966,356 | - | cheB | b1883 | 0.84 | -0.7 |
1,966,514 | + | -3.8 | |||
1,966,553 | - | -1.9 | |||
1,966,628 | + | cheR | b1884 | 0.12 | +1.0 |
1,966,628 | + | cheR | b1884 | 0.12 | -2.1 |
1,966,690 | - | cheR | b1884 | 0.19 | -3.0 |
1,966,733 | + | cheR | b1884 | 0.24 | -0.4 |
1,966,883 | - | cheR | b1884 | 0.41 | +0.7 |
1,966,883 | - | cheR | b1884 | 0.41 | +0.0 |
1,966,890 | - | cheR | b1884 | 0.42 | -1.6 |
1,967,084 | - | cheR | b1884 | 0.65 | +1.1 |
1,967,202 | + | cheR | b1884 | 0.78 | -3.0 |
1,967,413 | - | +0.9 | |||
1,967,413 | - | +0.3 |
Or see this region's nucleotide sequence