Strain Fitness in Escherichia coli BW25113 around b1222
Experiment: Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB |
---|---|---|---|---|---|
remove | |||||
1,274,343 | - | -1.3 | |||
1,274,391 | + | -0.9 | |||
1,274,489 | - | narL | b1221 | 0.13 | -1.1 |
1,274,543 | + | narL | b1221 | 0.22 | -0.2 |
1,274,543 | + | narL | b1221 | 0.22 | +3.5 |
1,274,583 | - | narL | b1221 | 0.28 | -0.9 |
1,274,668 | - | narL | b1221 | 0.41 | -0.1 |
1,274,677 | - | narL | b1221 | 0.42 | +0.2 |
1,274,677 | - | narL | b1221 | 0.42 | +0.4 |
1,275,022 | + | -2.8 | |||
1,275,022 | + | +0.1 | |||
1,275,035 | - | +1.6 | |||
1,275,035 | - | -2.4 | |||
1,275,476 | + | narX | b1222 | 0.24 | +1.6 |
1,275,525 | + | narX | b1222 | 0.27 | -2.3 |
1,275,525 | + | narX | b1222 | 0.27 | -2.4 |
1,275,784 | - | narX | b1222 | 0.41 | -0.5 |
1,275,905 | - | narX | b1222 | 0.48 | -2.6 |
1,275,905 | - | narX | b1222 | 0.48 | -2.0 |
1,276,167 | - | narX | b1222 | 0.62 | -3.2 |
1,276,167 | - | narX | b1222 | 0.62 | +0.4 |
1,276,194 | - | narX | b1222 | 0.64 | -0.7 |
1,276,194 | - | narX | b1222 | 0.64 | -1.0 |
1,276,540 | + | narX | b1222 | 0.83 | +1.3 |
1,276,550 | - | narX | b1222 | 0.84 | -1.3 |
1,276,664 | + | +2.7 | |||
1,276,664 | + | -2.3 | |||
1,276,711 | - | +0.6 | |||
1,276,756 | - | +0.5 | |||
1,276,825 | - | -0.2 | |||
1,276,915 | + | +0.3 | |||
1,277,137 | - | +1.8 | |||
1,277,162 | - | +5.1 | |||
1,277,162 | - | +0.9 | |||
1,277,166 | + | -1.5 | |||
1,277,184 | - | -0.3 | |||
1,277,196 | - | +0.4 | |||
1,277,688 | + | narK | b1223 | 0.36 | -0.8 |
1,277,765 | + | narK | b1223 | 0.42 | -0.2 |
1,277,799 | + | narK | b1223 | 0.44 | -0.3 |
Or see this region's nucleotide sequence