Strain Fitness in Escherichia coli BW25113 around b0368

Experiment: Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttauB and tauC overlap by 4 nucleotidestauC and tauD overlap by 4 nucleotidestauD and hemB are separated by 106 nucleotides b0366: tauB - taurine transporter subunit (NCBI), at 385,431 to 386,198 tauB b0367: tauC - taurine transporter subunit (NCBI), at 386,195 to 387,022 tauC b0368: tauD - taurine dioxygenase (NCBI), at 387,019 to 387,870 tauD b0369: hemB - 5-aminolevulinate dehydratase = porphobilinogen synthase (VIMSS), at 387,977 to 388,951 hemB Position (kb) 387 388Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 386.055 kb on + strand, within tauBat 386.094 kb on + strand, within tauBat 386.245 kb on - strandat 386.275 kb on + strandat 386.297 kb on - strand, within tauCat 386.297 kb on - strand, within tauCat 386.532 kb on + strand, within tauCat 386.532 kb on + strand, within tauCat 386.562 kb on + strand, within tauCat 386.586 kb on - strand, within tauCat 386.729 kb on + strand, within tauCat 386.829 kb on - strand, within tauCat 386.958 kb on + strandat 387.043 kb on - strandat 387.266 kb on + strand, within tauDat 387.266 kb on + strand, within tauDat 387.410 kb on + strand, within tauDat 387.622 kb on + strand, within tauDat 387.649 kb on + strand, within tauDat 387.649 kb on + strand, within tauDat 387.669 kb on - strand, within tauDat 387.678 kb on + strand, within tauDat 387.775 kb on + strand, within tauDat 387.775 kb on + strand, within tauDat 387.783 kb on - strand, within tauDat 387.896 kb on + strandat 387.908 kb on + strandat 387.908 kb on + strandat 387.916 kb on - strandat 387.916 kb on - strandat 387.916 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB
remove
386,055 + tauB b0366 0.81 -2.1
386,094 + tauB b0366 0.86 -1.2
386,245 - -0.0
386,275 + -1.3
386,297 - tauC b0367 0.12 +2.1
386,297 - tauC b0367 0.12 +0.2
386,532 + tauC b0367 0.41 -1.2
386,532 + tauC b0367 0.41 -0.1
386,562 + tauC b0367 0.44 -0.1
386,586 - tauC b0367 0.47 -0.1
386,729 + tauC b0367 0.64 -0.1
386,829 - tauC b0367 0.77 -2.6
386,958 + +1.6
387,043 - -2.8
387,266 + tauD b0368 0.29 +1.8
387,266 + tauD b0368 0.29 +2.8
387,410 + tauD b0368 0.46 +0.2
387,622 + tauD b0368 0.71 -0.7
387,649 + tauD b0368 0.74 +1.2
387,649 + tauD b0368 0.74 -2.3
387,669 - tauD b0368 0.76 +3.3
387,678 + tauD b0368 0.77 +1.3
387,775 + tauD b0368 0.89 +0.9
387,775 + tauD b0368 0.89 -0.5
387,783 - tauD b0368 0.90 +0.5
387,896 + +1.3
387,908 + -0.1
387,908 + +0.7
387,916 - -1.5
387,916 - -0.8
387,916 - -0.9

Or see this region's nucleotide sequence