Experiment: D-Glucose (C) pH 7.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4519 and PP_4520 are separated by 62 nucleotides PP_4520 and PP_4521 are separated by 64 nucleotides
PP_4519: PP_4519 - Agglutination protein, at 5,132,919 to 5,134,277
_4519
PP_4520: PP_4520 - conserved protein of unknown function, at 5,134,340 to 5,134,939
_4520
PP_4521: PP_4521 - putative aerotaxis receptor, at 5,135,004 to 5,136,569
_4521
Position (kb) 5134
5135 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5133.666 kb on + strand, within PP_4519 at 5133.666 kb on + strand, within PP_4519 at 5133.666 kb on + strand, within PP_4519 at 5133.666 kb on + strand, within PP_4519 at 5133.667 kb on - strand, within PP_4519 at 5133.667 kb on - strand, within PP_4519 at 5133.711 kb on + strand, within PP_4519 at 5133.711 kb on + strand, within PP_4519 at 5133.712 kb on - strand, within PP_4519 at 5133.735 kb on + strand, within PP_4519 at 5133.735 kb on + strand, within PP_4519 at 5133.736 kb on - strand, within PP_4519 at 5133.736 kb on - strand, within PP_4519 at 5133.736 kb on - strand, within PP_4519 at 5133.837 kb on + strand, within PP_4519 at 5133.837 kb on + strand, within PP_4519 at 5133.837 kb on + strand, within PP_4519 at 5133.838 kb on - strand, within PP_4519 at 5133.838 kb on - strand, within PP_4519 at 5133.874 kb on + strand, within PP_4519 at 5133.875 kb on - strand, within PP_4519 at 5133.875 kb on - strand, within PP_4519 at 5133.875 kb on - strand, within PP_4519 at 5133.875 kb on - strand, within PP_4519 at 5134.009 kb on - strand, within PP_4519 at 5134.108 kb on - strand, within PP_4519 at 5134.205 kb on + strand at 5134.206 kb on - strand at 5134.206 kb on - strand at 5134.357 kb on + strand at 5134.357 kb on + strand at 5134.358 kb on - strand at 5134.358 kb on - strand at 5134.358 kb on - strand at 5134.373 kb on + strand at 5134.373 kb on + strand at 5134.374 kb on - strand at 5134.587 kb on + strand, within PP_4520 at 5134.588 kb on - strand, within PP_4520 at 5134.588 kb on - strand, within PP_4520 at 5134.588 kb on - strand, within PP_4520 at 5134.663 kb on - strand, within PP_4520 at 5134.663 kb on - strand, within PP_4520 at 5134.663 kb on - strand, within PP_4520 at 5134.663 kb on - strand, within PP_4520 at 5134.889 kb on + strand at 5134.890 kb on - strand at 5134.890 kb on - strand at 5135.031 kb on - strand at 5135.031 kb on - strand at 5135.038 kb on + strand at 5135.342 kb on + strand, within PP_4521 at 5135.343 kb on - strand, within PP_4521 at 5135.343 kb on - strand, within PP_4521 at 5135.514 kb on - strand, within PP_4521 at 5135.514 kb on - strand, within PP_4521 at 5135.514 kb on - strand, within PP_4521 at 5135.667 kb on - strand, within PP_4521 at 5135.667 kb on - strand, within PP_4521 at 5135.917 kb on + strand, within PP_4521 at 5135.918 kb on - strand, within PP_4521 at 5135.918 kb on - strand, within PP_4521
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) pH 7.5 remove 5,133,666 + PP_4519 0.55 -0.3 5,133,666 + PP_4519 0.55 +0.3 5,133,666 + PP_4519 0.55 +0.4 5,133,666 + PP_4519 0.55 +3.1 5,133,667 - PP_4519 0.55 +0.0 5,133,667 - PP_4519 0.55 -0.5 5,133,711 + PP_4519 0.58 +0.8 5,133,711 + PP_4519 0.58 -0.6 5,133,712 - PP_4519 0.58 -0.1 5,133,735 + PP_4519 0.60 +0.0 5,133,735 + PP_4519 0.60 -1.3 5,133,736 - PP_4519 0.60 +0.1 5,133,736 - PP_4519 0.60 +0.0 5,133,736 - PP_4519 0.60 +0.7 5,133,837 + PP_4519 0.68 -0.1 5,133,837 + PP_4519 0.68 +0.3 5,133,837 + PP_4519 0.68 +0.1 5,133,838 - PP_4519 0.68 +0.4 5,133,838 - PP_4519 0.68 -0.3 5,133,874 + PP_4519 0.70 -0.3 5,133,875 - PP_4519 0.70 +0.4 5,133,875 - PP_4519 0.70 -2.5 5,133,875 - PP_4519 0.70 -0.6 5,133,875 - PP_4519 0.70 +0.4 5,134,009 - PP_4519 0.80 -0.2 5,134,108 - PP_4519 0.87 -0.4 5,134,205 + -0.1 5,134,206 - -0.6 5,134,206 - +0.1 5,134,357 + +0.2 5,134,357 + +2.1 5,134,358 - -0.2 5,134,358 - -2.6 5,134,358 - +0.1 5,134,373 + +0.1 5,134,373 + -0.3 5,134,374 - +0.2 5,134,587 + PP_4520 0.41 +0.1 5,134,588 - PP_4520 0.41 -0.3 5,134,588 - PP_4520 0.41 +1.0 5,134,588 - PP_4520 0.41 +2.2 5,134,663 - PP_4520 0.54 +1.1 5,134,663 - PP_4520 0.54 +1.0 5,134,663 - PP_4520 0.54 -0.1 5,134,663 - PP_4520 0.54 +0.7 5,134,889 + +0.1 5,134,890 - +0.2 5,134,890 - +0.1 5,135,031 - +0.8 5,135,031 - +0.5 5,135,038 + -0.5 5,135,342 + PP_4521 0.22 -0.4 5,135,343 - PP_4521 0.22 -1.2 5,135,343 - PP_4521 0.22 -1.2 5,135,514 - PP_4521 0.33 -0.4 5,135,514 - PP_4521 0.33 -0.5 5,135,514 - PP_4521 0.33 -0.1 5,135,667 - PP_4521 0.42 +0.3 5,135,667 - PP_4521 0.42 -0.6 5,135,917 + PP_4521 0.58 +0.3 5,135,918 - PP_4521 0.58 +0.6 5,135,918 - PP_4521 0.58 +1.1
Or see this region's nucleotide sequence