Experiment: Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Biofilm_growth_time=7hrs; Biofilm_growth_media=LB; Sample_type=planktonic; Outgrowth=None
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mglB and galS are separated by 279 nucleotides galS and yeiB are separated by 141 nucleotides
b2150: mglB - methyl-galactoside transporter subunit (NCBI), at 2,237,372 to 2,238,370
mglB
b2151: galS - DNA-binding transcriptional repressor (NCBI), at 2,238,650 to 2,239,690
galS
b2152: yeiB - conserved inner membrane protein (NCBI), at 2,239,832 to 2,240,989
yeiB
Position (kb)
2238
2239
2240 Strain fitness (log2 ratio)
-1
0
1
2 at 2237.897 kb on - strand, within mglB at 2237.901 kb on + strand, within mglB at 2237.927 kb on - strand, within mglB at 2237.989 kb on - strand, within mglB at 2238.223 kb on - strand, within mglB at 2238.269 kb on + strand, within mglB at 2238.309 kb on + strand at 2238.309 kb on + strand at 2238.488 kb on + strand at 2238.488 kb on + strand at 2238.602 kb on + strand at 2238.602 kb on + strand at 2238.647 kb on + strand at 2238.762 kb on - strand, within galS at 2238.762 kb on - strand, within galS at 2238.839 kb on - strand, within galS at 2238.857 kb on - strand, within galS at 2239.012 kb on + strand, within galS at 2239.042 kb on - strand, within galS at 2239.066 kb on + strand, within galS at 2239.098 kb on - strand, within galS at 2239.098 kb on - strand, within galS at 2239.112 kb on - strand, within galS at 2239.267 kb on - strand, within galS at 2239.394 kb on + strand, within galS at 2239.429 kb on - strand, within galS at 2239.429 kb on - strand, within galS at 2239.452 kb on + strand, within galS at 2239.532 kb on + strand, within galS at 2239.590 kb on - strand at 2239.590 kb on - strand at 2239.605 kb on - strand at 2239.605 kb on - strand at 2239.699 kb on - strand at 2239.752 kb on - strand at 2239.937 kb on + strand at 2239.953 kb on + strand, within yeiB at 2240.119 kb on - strand, within yeiB at 2240.217 kb on + strand, within yeiB at 2240.262 kb on - strand, within yeiB at 2240.313 kb on - strand, within yeiB at 2240.566 kb on + strand, within yeiB at 2240.566 kb on + strand, within yeiB
Per-strain Table
Position Strand Gene LocusTag Fraction Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Biofilm_growth_time=7hrs; Biofilm_growth_media=LB; Sample_type=planktonic; Outgrowth=None remove 2,237,897 - mglB b2150 0.53 -0.3 2,237,901 + mglB b2150 0.53 +0.8 2,237,927 - mglB b2150 0.56 +0.0 2,237,989 - mglB b2150 0.62 -0.1 2,238,223 - mglB b2150 0.85 -0.9 2,238,269 + mglB b2150 0.90 +0.0 2,238,309 + -0.2 2,238,309 + -0.1 2,238,488 + -0.1 2,238,488 + -0.0 2,238,602 + +1.8 2,238,602 + +0.4 2,238,647 + -0.3 2,238,762 - galS b2151 0.11 +0.1 2,238,762 - galS b2151 0.11 -0.5 2,238,839 - galS b2151 0.18 -0.0 2,238,857 - galS b2151 0.20 +0.1 2,239,012 + galS b2151 0.35 -0.3 2,239,042 - galS b2151 0.38 -0.9 2,239,066 + galS b2151 0.40 -0.4 2,239,098 - galS b2151 0.43 -0.3 2,239,098 - galS b2151 0.43 +0.2 2,239,112 - galS b2151 0.44 -0.2 2,239,267 - galS b2151 0.59 -0.3 2,239,394 + galS b2151 0.71 +1.3 2,239,429 - galS b2151 0.75 -0.9 2,239,429 - galS b2151 0.75 -0.3 2,239,452 + galS b2151 0.77 +0.8 2,239,532 + galS b2151 0.85 -0.4 2,239,590 - +0.4 2,239,590 - -0.4 2,239,605 - +0.1 2,239,605 - +0.3 2,239,699 - -0.2 2,239,752 - +0.0 2,239,937 + +0.2 2,239,953 + yeiB b2152 0.10 +0.0 2,240,119 - yeiB b2152 0.25 +0.1 2,240,217 + yeiB b2152 0.33 +0.3 2,240,262 - yeiB b2152 0.37 -0.8 2,240,313 - yeiB b2152 0.42 -0.2 2,240,566 + yeiB b2152 0.63 -0.7 2,240,566 + yeiB b2152 0.63 +0.8
Or see this region's nucleotide sequence